PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5101-5150 / 86044 show all
asubramanian-gatkSNPtvmap_l125_m1_e0homalt
38.6733
23.9761
99.9289
88.4461
14054455140510
0.0000
asubramanian-gatkSNPtvmap_l125_m2_e0*
46.3923
30.2201
99.7997
92.3039
4983115064982102
20.0000
asubramanian-gatkSNPtvmap_l125_m2_e0het
49.8851
33.2599
99.7415
93.1706
34736969347292
22.2222
asubramanian-gatkSNPtvmap_l125_m2_e0hetalt
37.8378
23.3333
100.0000
94.6970
723700
asubramanian-gatkSNPtvmap_l125_m2_e0homalt
39.9681
24.9792
99.9335
89.0706
15034514150310
0.0000
asubramanian-gatkSNPtvmap_l125_m2_e1*
46.6345
30.4256
99.8030
92.2720
5068115895067102
20.0000
asubramanian-gatkSNPtvmap_l125_m2_e1het
50.1525
33.4976
99.7460
93.1412
35357018353492
22.2222
asubramanian-gatkSNPtvmap_l125_m2_e1hetalt
37.8378
23.3333
100.0000
94.6970
723700
asubramanian-gatkSNPtvmap_l125_m2_e1homalt
40.1526
25.1235
99.9345
89.0207
15264548152610
0.0000
asubramanian-gatkSNPtvmap_l150_m0_e0*
29.8574
17.5611
99.5924
97.2219
733344173331
33.3333
asubramanian-gatkSNPtvmap_l150_m0_e0het
32.4897
19.4161
99.4595
97.4792
552229155231
33.3333
asubramanian-gatkSNPtvmap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.0000
12100
asubramanian-gatkSNPtvmap_l150_m0_e0homalt
23.8727
13.5542
100.0000
95.9331
180114818000
asubramanian-gatkSNPtvmap_l150_m1_e0*
37.4814
23.0755
99.7622
94.8394
25188394251761
16.6667
asubramanian-gatkSNPtvmap_l150_m1_e0het
40.8243
25.6695
99.6644
95.4254
17835163178261
16.6667
asubramanian-gatkSNPtvmap_l150_m1_e0hetalt
40.0000
25.0000
100.0000
94.6237
515500
asubramanian-gatkSNPtvmap_l150_m1_e0homalt
31.2233
18.4997
100.0000
92.4835
730321673000
asubramanian-gatkSNPtvmap_l150_m2_e0*
39.2587
24.4386
99.7483
94.9137
27758580277471
14.2857
asubramanian-gatkSNPtvmap_l150_m2_e0het
42.5209
27.0270
99.6439
95.4728
19605292195971
14.2857
asubramanian-gatkSNPtvmap_l150_m2_e0hetalt
40.0000
25.0000
100.0000
95.6140
515500
asubramanian-gatkSNPtvmap_l150_m2_e0homalt
33.1085
19.8384
100.0000
92.7263
810327381000
asubramanian-gatkSNPtvmap_l150_m2_e1*
39.5063
24.6305
99.7534
94.8804
28338669283271
14.2857
asubramanian-gatkSNPtvmap_l150_m2_e1het
42.7242
27.1911
99.6507
95.4527
19985350199771
14.2857
asubramanian-gatkSNPtvmap_l150_m2_e1hetalt
40.0000
25.0000
100.0000
95.6140
515500
asubramanian-gatkSNPtvmap_l150_m2_e1homalt
33.4408
20.0774
100.0000
92.6353
830330483000
asubramanian-gatkSNPtvmap_l250_m0_e0*
28.2828
16.4706
100.0000
99.1823
12663912600
asubramanian-gatkSNPtvmap_l250_m0_e0het
28.2282
16.4336
100.0000
99.2644
944789400
asubramanian-gatkSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvmap_l250_m0_e0homalt
28.4444
16.5803
100.0000
98.7688
321613200
asubramanian-gatkSNPtvmap_l250_m1_e0*
27.4267
15.9048
99.5272
98.5741
421222642120
0.0000
asubramanian-gatkSNPtvmap_l250_m1_e0het
29.7001
17.4594
99.3631
98.7032
312147531220
0.0000
asubramanian-gatkSNPtvmap_l250_m1_e0hetalt
0.0000
100.0000
04000
asubramanian-gatkSNPtvmap_l250_m1_e0homalt
22.5907
12.7336
100.0000
97.9792
10974710900
asubramanian-gatkSNPtvmap_l250_m2_e0*
28.9950
16.9674
99.5927
98.5624
489239348920
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e0het
31.0570
18.4021
99.4429
98.7043
357158335720
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNPtvmap_l250_m2_e0homalt
24.5318
13.9808
100.0000
97.9454
13180613100
asubramanian-gatkSNPtvmap_l250_m2_e1*
29.3068
17.1811
99.6024
98.5560
501241550120
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e1het
31.3759
18.6260
99.4565
98.6990
366159936620
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNPtvmap_l250_m2_e1homalt
24.8148
14.1649
100.0000
97.9315
13481213400
asubramanian-gatkSNPtvmap_siren*
72.2865
56.6449
99.8618
75.5276
2601719913260113612
33.3333
asubramanian-gatkSNPtvmap_sirenhet
74.9187
59.9671
99.8022
78.0195
1715611453171533410
29.4118
asubramanian-gatkSNPtvmap_sirenhetalt
65.0000
48.1481
100.0000
83.7500
39423900
asubramanian-gatkSNPtvmap_sirenhomalt
67.6949
51.1717
99.9773
68.4987
88228418881922
100.0000
asubramanian-gatkSNPtvsegdup*
97.9981
96.6831
99.3493
93.1884
82492838245546
11.1111
asubramanian-gatkSNPtvsegduphet
97.9042
96.7657
99.0698
94.3222
51161715112480
0.0000
asubramanian-gatkSNPtvsegduphetalt
92.3077
85.7143
100.0000
97.5000
61600
asubramanian-gatkSNPtvsegduphomalt
98.1636
96.5720
99.8085
89.8001
3127111312766
100.0000
asubramanian-gatkSNPtvsegdupwithalt*
0.0000
100.0000
00000