PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83501-83550 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | HG002complexvar | * | 98.9923 | 98.6301 | 99.3571 | 63.4999 | 75884 | 1054 | 75884 | 491 | 440 | 89.6130 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | het | 98.9928 | 98.7730 | 99.2136 | 57.1040 | 45645 | 567 | 45545 | 361 | 319 | 88.3657 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | hetalt | 94.3915 | 91.0246 | 98.0170 | 68.2440 | 3367 | 332 | 3460 | 70 | 68 | 97.1429 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | homalt | 99.6016 | 99.4265 | 99.7773 | 55.5190 | 26872 | 155 | 26879 | 60 | 53 | 88.3333 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | * | 93.3591 | 92.7336 | 93.9930 | 68.4001 | 27783 | 2177 | 27758 | 1774 | 1747 | 98.4780 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | het | 81.4607 | 94.3576 | 71.6654 | 76.0047 | 3863 | 231 | 3804 | 1504 | 1483 | 98.6037 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | hetalt | 95.8717 | 92.3153 | 99.7130 | 50.6553 | 23245 | 1935 | 23276 | 67 | 66 | 98.5075 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | homalt | 86.3667 | 98.3965 | 76.9580 | 80.9842 | 675 | 11 | 678 | 203 | 198 | 97.5369 | |
| rpoplin-dv42 | INDEL | * | decoy | * | 94.7368 | 90.0000 | 100.0000 | 99.9971 | 9 | 1 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9534 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8494 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9304 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | func_cds | * | 98.8729 | 98.4270 | 99.3228 | 93.2232 | 438 | 7 | 440 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | func_cds | het | 98.5959 | 98.1308 | 99.0654 | 47.2906 | 210 | 4 | 212 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | func_cds | homalt | 99.3348 | 99.1150 | 99.5556 | 35.7143 | 224 | 2 | 224 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.3657 | 89.9732 | 92.8019 | 79.8114 | 9063 | 1010 | 8999 | 698 | 633 | 90.6877 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.9263 | 93.1683 | 85.0537 | 75.7901 | 3764 | 276 | 3642 | 640 | 581 | 90.7813 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.0405 | 84.0481 | 99.3020 | 38.2843 | 3214 | 610 | 3272 | 23 | 23 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3271 | 94.3866 | 98.3491 | 65.6458 | 2085 | 124 | 2085 | 35 | 29 | 82.8571 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 82.0513 | 80.0000 | 84.2105 | 99.9474 | 16 | 4 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 84.6154 | 91.6667 | 78.5714 | 99.2269 | 11 | 1 | 11 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4848 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.7326 | 3 | 2 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.4841 | 98.2647 | 98.7045 | 79.6128 | 92810 | 1639 | 92797 | 1218 | 1144 | 93.9245 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.4674 | 99.0988 | 97.8440 | 74.2336 | 47836 | 435 | 47787 | 1053 | 987 | 93.7322 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.6681 | 94.0715 | 99.4120 | 57.9684 | 14503 | 914 | 14541 | 86 | 84 | 97.6744 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3981 | 99.0572 | 99.7414 | 71.0854 | 30471 | 290 | 30469 | 79 | 73 | 92.4051 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.7786 | 96.2480 | 97.3151 | 87.4466 | 62899 | 2452 | 62814 | 1733 | 1611 | 92.9602 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.3970 | 97.7723 | 95.0598 | 71.0826 | 29801 | 679 | 29633 | 1540 | 1434 | 93.1169 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5845 | 92.0383 | 99.4149 | 38.4055 | 15375 | 1330 | 15461 | 91 | 90 | 98.9011 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4857 | 97.5614 | 99.4277 | 64.2143 | 17723 | 443 | 17720 | 102 | 87 | 85.2941 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7592 | 96.2430 | 97.2808 | 87.7639 | 2075 | 81 | 2075 | 58 | 37 | 63.7931 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.3619 | 97.0541 | 95.6795 | 75.5568 | 1219 | 37 | 1218 | 55 | 35 | 63.6364 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.2581 | 85.6287 | 100.0000 | 64.9635 | 143 | 24 | 144 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4127 | 97.2715 | 99.5810 | 71.6772 | 713 | 20 | 713 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 84.8485 | 82.3529 | 87.5000 | 99.9550 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 90.0000 | 81.8182 | 99.3612 | 9 | 1 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7273 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8158 | 98.6325 | 98.9998 | 83.5908 | 5049 | 70 | 5048 | 51 | 37 | 72.5490 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7353 | 98.9667 | 98.5050 | 75.1773 | 2969 | 31 | 2965 | 45 | 33 | 73.3333 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.4815 | 93.9914 | 99.1071 | 75.0834 | 219 | 14 | 222 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2269 | 98.6744 | 99.7855 | 71.4089 | 1861 | 25 | 1861 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.2126 | 99.1168 | 99.3086 | 83.9167 | 3591 | 32 | 3591 | 25 | 21 | 84.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2761 | 99.4855 | 99.0676 | 75.6554 | 2127 | 11 | 2125 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5368 | 94.6970 | 98.4496 | 79.6850 | 125 | 7 | 127 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3692 | 98.9653 | 99.7765 | 72.8230 | 1339 | 14 | 1339 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.7118 | 87.9829 | 91.5099 | 73.1427 | 5352 | 731 | 5303 | 492 | 469 | 95.3252 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.7747 | 91.3682 | 80.8266 | 73.3477 | 1990 | 188 | 1897 | 450 | 430 | 95.5556 | |