PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83251-83300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | * | 99.3433 | 99.3594 | 99.3272 | 64.7652 | 49168 | 317 | 49161 | 333 | 19 | 5.7057 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | het | 99.0592 | 99.1473 | 98.9712 | 67.5574 | 30696 | 264 | 30689 | 319 | 6 | 1.8809 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 64.8352 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | homalt | 99.8214 | 99.7134 | 99.9296 | 58.8080 | 18441 | 53 | 18441 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | * | 98.7816 | 98.7933 | 98.7699 | 72.8522 | 12608 | 154 | 12606 | 157 | 6 | 3.8217 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | het | 98.3262 | 98.4751 | 98.1776 | 75.7875 | 8137 | 126 | 8135 | 151 | 1 | 0.6623 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 8 | 0 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | homalt | 99.6205 | 99.3765 | 99.8657 | 64.9902 | 4463 | 28 | 4463 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | * | 99.1157 | 99.1614 | 99.0701 | 69.2148 | 29089 | 246 | 29085 | 273 | 11 | 4.0293 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | het | 98.7264 | 98.8941 | 98.5593 | 72.2989 | 18064 | 202 | 18060 | 264 | 3 | 1.1364 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7597 | 99.6016 | 99.9183 | 62.2389 | 11001 | 44 | 11001 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | * | 99.1246 | 99.1738 | 99.0754 | 71.0207 | 30008 | 250 | 30004 | 280 | 11 | 3.9286 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | het | 98.7385 | 98.9087 | 98.5689 | 73.7413 | 18670 | 206 | 18666 | 271 | 3 | 1.1070 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.2174 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | homalt | 99.7663 | 99.6126 | 99.9205 | 64.9616 | 11314 | 44 | 11314 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | * | 99.1254 | 99.1822 | 99.0686 | 71.0811 | 30319 | 250 | 30315 | 285 | 11 | 3.8597 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | het | 98.7395 | 98.9207 | 98.5590 | 73.8046 | 18881 | 206 | 18877 | 276 | 3 | 1.0870 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.7143 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | * | 98.4611 | 98.4989 | 98.4234 | 78.1788 | 7743 | 118 | 7741 | 124 | 5 | 4.0323 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | het | 97.9052 | 98.1362 | 97.6753 | 80.7049 | 5002 | 95 | 5000 | 119 | 1 | 0.8403 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.4913 | 99.1670 | 99.8177 | 71.1111 | 2738 | 23 | 2738 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | * | 98.9223 | 98.9600 | 98.8846 | 73.7335 | 19507 | 205 | 19503 | 220 | 8 | 3.6364 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | het | 98.4666 | 98.6500 | 98.2839 | 76.4844 | 12203 | 167 | 12199 | 213 | 2 | 0.9390 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | homalt | 99.6923 | 99.4814 | 99.9041 | 67.2252 | 7289 | 38 | 7289 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | * | 98.9377 | 98.9908 | 98.8846 | 75.4120 | 20305 | 207 | 20301 | 229 | 9 | 3.9301 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | het | 98.4890 | 98.6958 | 98.2832 | 77.8632 | 12713 | 168 | 12709 | 222 | 3 | 1.3514 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1795 | 59 | 0 | 59 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 88.4120 | 26 | 7 | 26 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 82.7586 | 70.5882 | 100.0000 | 90.6977 | 12 | 5 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.3333 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 86.0465 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 94.1176 | 91.2281 | 97.1963 | 82.9346 | 104 | 10 | 104 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | het | 93.8053 | 89.8305 | 98.1481 | 82.8025 | 53 | 6 | 53 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 74.6835 | 20 | 2 | 20 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 85.8974 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 94.2222 | 91.3793 | 97.2477 | 84.0176 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 83.4320 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 77.5281 | 20 | 2 | 20 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | * | 94.2222 | 91.3793 | 97.2477 | 84.4063 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 83.7681 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |