PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82851-82900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9831 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8632 | 98.1277 | 99.6099 | 65.9765 | 3826 | 73 | 3830 | 15 | 10 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0254 | 98.4733 | 99.5838 | 72.6059 | 1677 | 26 | 1675 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.9702 | 96.0212 | 100.0000 | 40.0000 | 1086 | 45 | 1092 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5318 | 99.8122 | 99.2530 | 67.9437 | 1063 | 2 | 1063 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.1169 | 89.2193 | 99.5833 | 74.7102 | 240 | 29 | 239 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.5995 | 78.4314 | 96.6667 | 94.1860 | 40 | 11 | 29 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.6731 | 91.7051 | 100.0000 | 37.4251 | 199 | 18 | 209 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.9899 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9443 | 98.1905 | 99.7099 | 59.8758 | 1031 | 19 | 1031 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0354 | 98.2979 | 99.7840 | 66.4006 | 462 | 8 | 462 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.2114 | 96.4856 | 100.0000 | 31.8284 | 302 | 11 | 302 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 64.4180 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 53.8462 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 88.0000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 8.6957 | 21 | 2 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | * | 98.0718 | 98.1584 | 97.9853 | 81.8544 | 533 | 10 | 535 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | het | 97.4050 | 97.5460 | 97.2644 | 82.8646 | 318 | 8 | 320 | 9 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.2203 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2806 | 99.5192 | 99.0431 | 78.4758 | 207 | 1 | 207 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | * | 98.3132 | 97.8342 | 98.7970 | 80.6967 | 1310 | 29 | 1314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | het | 97.8051 | 97.2973 | 98.3182 | 81.2333 | 756 | 21 | 760 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.1592 | 40 | 4 | 40 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3237 | 99.2278 | 99.4197 | 79.1700 | 514 | 4 | 514 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.3491 | 97.8801 | 98.8227 | 82.1466 | 1339 | 29 | 1343 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | het | 97.8495 | 97.3518 | 98.3523 | 82.6097 | 772 | 21 | 776 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.2204 | 40 | 4 | 40 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3402 | 99.2467 | 99.4340 | 80.8110 | 527 | 4 | 527 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.3812 | 97.9211 | 98.8456 | 82.2966 | 1366 | 29 | 1370 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | het | 97.8948 | 97.4074 | 98.3871 | 82.7741 | 789 | 21 | 793 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 87.3065 | 41 | 4 | 41 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3513 | 99.2593 | 99.4434 | 80.9339 | 536 | 4 | 536 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | * | 96.7902 | 97.0968 | 96.4856 | 86.1688 | 301 | 9 | 302 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | het | 95.8669 | 96.3542 | 95.3846 | 86.8243 | 185 | 7 | 186 | 9 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6900 | 99.1228 | 98.2609 | 83.5479 | 113 | 1 | 113 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | * | 98.0672 | 97.7108 | 98.4262 | 83.5622 | 811 | 19 | 813 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4247 | 97.1193 | 97.7320 | 84.0145 | 472 | 14 | 474 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 96.9697 | 94.1176 | 100.0000 | 91.8367 | 16 | 1 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0798 | 98.7768 | 99.3846 | 81.8942 | 323 | 4 | 323 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | * | 98.1282 | 97.7830 | 98.4760 | 85.0298 | 838 | 19 | 840 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4818 | 97.1831 | 97.7823 | 85.5182 | 483 | 14 | 485 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 91.9643 | 18 | 1 | 18 | 0 | 0 | ||