PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82801-82850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | homalt | 99.7865 | 99.6758 | 99.8974 | 63.2172 | 5841 | 19 | 5841 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | * | 99.2122 | 99.2904 | 99.1340 | 71.8789 | 16372 | 117 | 16370 | 143 | 4 | 2.7972 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | het | 98.8912 | 99.0902 | 98.6930 | 74.4522 | 10347 | 95 | 10345 | 137 | 1 | 0.7299 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.2772 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7837 | 99.6676 | 99.9000 | 65.8746 | 5997 | 20 | 5997 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | * | 99.2171 | 99.2976 | 99.1368 | 71.9418 | 16540 | 117 | 16538 | 144 | 4 | 2.7778 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | het | 98.8982 | 99.0998 | 98.6974 | 74.5288 | 10458 | 95 | 10456 | 138 | 1 | 0.7246 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6707 | 99.9010 | 65.8803 | 6054 | 20 | 6054 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | * | 98.6080 | 98.4427 | 98.7737 | 78.9854 | 4109 | 65 | 4108 | 51 | 2 | 3.9216 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | * | 98.9969 | 99.0469 | 98.9470 | 74.2022 | 10808 | 104 | 10806 | 115 | 3 | 2.6087 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | het | 98.5915 | 98.7763 | 98.4075 | 76.8439 | 6861 | 85 | 6859 | 111 | 1 | 0.9009 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.7335 | 99.5692 | 99.8983 | 67.6642 | 3929 | 17 | 3929 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | * | 99.0273 | 99.0841 | 98.9706 | 75.8842 | 11251 | 104 | 11249 | 117 | 3 | 2.5641 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | het | 98.6373 | 98.8279 | 98.4474 | 78.1985 | 7167 | 85 | 7165 | 113 | 1 | 0.8850 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | homalt | 99.7424 | 99.5836 | 99.9017 | 70.2246 | 4066 | 17 | 4066 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | * | 99.0225 | 99.0871 | 98.9579 | 75.9025 | 11397 | 105 | 11395 | 120 | 3 | 2.5000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | het | 98.6349 | 98.8432 | 98.4275 | 78.2306 | 7263 | 85 | 7261 | 116 | 1 | 0.8621 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.5000 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.7335 | 99.5646 | 99.9029 | 70.1838 | 4116 | 18 | 4116 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | * | 97.1091 | 96.6013 | 97.6222 | 91.9886 | 739 | 26 | 739 | 18 | 2 | 11.1111 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | het | 96.7458 | 96.1538 | 97.3451 | 92.1972 | 550 | 22 | 550 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 91.2528 | 189 | 4 | 189 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | * | 98.0065 | 97.5066 | 98.5115 | 87.3534 | 2581 | 66 | 2581 | 39 | 3 | 7.6923 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | het | 97.2943 | 96.5865 | 98.0125 | 88.5090 | 1726 | 61 | 1726 | 35 | 1 | 2.8571 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | homalt | 99.4740 | 99.4159 | 99.5322 | 84.0366 | 851 | 5 | 851 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | * | 98.1178 | 97.6752 | 98.5644 | 88.1773 | 2815 | 67 | 2815 | 41 | 3 | 7.3171 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | het | 97.4585 | 96.8557 | 98.0689 | 89.2184 | 1879 | 61 | 1879 | 37 | 1 | 2.7027 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8049 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | homalt | 99.4658 | 99.3597 | 99.5722 | 85.2640 | 931 | 6 | 931 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | * | 98.1230 | 97.7023 | 98.5472 | 88.2575 | 2849 | 67 | 2849 | 42 | 3 | 7.1429 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | het | 97.4661 | 96.8957 | 98.0433 | 89.2902 | 1904 | 61 | 1904 | 38 | 1 | 2.6316 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | homalt | 99.4709 | 99.3658 | 99.5763 | 85.3530 | 940 | 6 | 940 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_siren | * | 99.5658 | 99.6081 | 99.5235 | 57.2670 | 45750 | 180 | 45742 | 219 | 8 | 3.6530 | |
| raldana-dualsentieon | SNP | tv | map_siren | het | 99.3697 | 99.4827 | 99.2570 | 59.7589 | 28461 | 148 | 28456 | 213 | 2 | 0.9390 | |
| raldana-dualsentieon | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_siren | homalt | 99.9013 | 99.8318 | 99.9710 | 52.2802 | 17211 | 29 | 17208 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | segdup | * | 99.5671 | 99.7656 | 99.3693 | 91.0002 | 8512 | 20 | 8508 | 54 | 6 | 11.1111 | |
| raldana-dualsentieon | SNP | tv | segdup | het | 99.3773 | 99.6595 | 99.0966 | 91.7904 | 5269 | 18 | 5265 | 48 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9005 | 93.9873 | 100.0000 | 71.9133 | 297 | 19 | 298 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 63.9569 | 968 | 0 | 968 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9928 | 1 | 0 | 1 | 0 | 0 | ||