PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4051-4100 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8289 | 94.4588 | 99.3210 | 38.8312 | 1824 | 107 | 2048 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8086 | 99.5997 | 98.0299 | 75.0492 | 1244 | 5 | 1244 | 25 | 20 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9660 | 98.1027 | 97.8297 | 69.4907 | 1758 | 34 | 1758 | 39 | 30 | 76.9231 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.1826 | 99.5074 | 94.9640 | 83.8841 | 606 | 3 | 528 | 28 | 21 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.8851 | 96.3010 | 99.5221 | 33.7816 | 755 | 29 | 833 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8792 | 99.4987 | 98.2673 | 65.6463 | 397 | 2 | 397 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.5148 | 92.3810 | 92.6491 | 58.3237 | 679 | 56 | 668 | 53 | 51 | 96.2264 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5982 | 99.4083 | 63.6364 | 84.3528 | 168 | 1 | 70 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3542 | 87.6993 | 99.7886 | 34.9381 | 385 | 54 | 472 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.0943 | 99.2126 | 91.3043 | 54.0000 | 126 | 1 | 126 | 12 | 11 | 91.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3051 | 100.0000 | 96.6667 | 84.7973 | 87 | 0 | 87 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 87.4687 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.8101 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.9640 | 97.0588 | 92.9577 | 96.7356 | 66 | 2 | 66 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 95.4545 | 89.3617 | 96.6284 | 42 | 2 | 42 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6994 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.5547 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1121 | 98.7531 | 99.4737 | 81.8095 | 396 | 5 | 378 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.3344 | 97.5610 | 99.1202 | 38.2246 | 320 | 8 | 338 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0958 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9781 | 96.7532 | 97.2039 | 68.0840 | 596 | 20 | 591 | 17 | 15 | 88.2353 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1642 | 98.7805 | 91.8033 | 88.0392 | 162 | 2 | 112 | 10 | 8 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8861 | 95.1429 | 98.6945 | 35.5219 | 333 | 17 | 378 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5366 | 99.0196 | 98.0583 | 64.6048 | 101 | 1 | 101 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0536 | 100.0000 | 98.1250 | 68.1909 | 157 | 0 | 157 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 79.2517 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6259 | 45 | 0 | 45 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.1159 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.3077 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 44.4444 | 23 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2069 | 89.2857 | 83.3333 | 96.8051 | 25 | 3 | 25 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 84.4720 | 89.4737 | 80.0000 | 97.0545 | 17 | 2 | 16 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 4 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.5845 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.2655 | 90.8046 | 87.7778 | 94.9153 | 79 | 8 | 79 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.6603 | 93.4783 | 80.7692 | 95.8031 | 43 | 3 | 42 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.7037 | 22 | 4 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.4539 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.1304 | 91.1111 | 87.2340 | 95.4369 | 82 | 8 | 82 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.1148 | 93.7500 | 79.6296 | 96.2211 | 45 | 3 | 43 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.1304 | 22 | 4 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.8992 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |