PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3251-3300 / 86044 show all
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.5578
80800
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.9412
60600
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7742
20200
astatham-gatkSNPtimap_l100_m0_e0*
92.5350
86.2891
99.7557
72.1287
187862985187834624
52.1739
astatham-gatkSNPtimap_l100_m0_e0het
88.3269
79.3034
99.6674
77.0849
110892894110863716
43.2432
astatham-gatkSNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
65.0000
1401400
astatham-gatkSNPtimap_l100_m0_e0homalt
99.3534
98.8294
99.8830
59.4667
768391768398
88.8889
astatham-gatkSNPtimap_l100_m1_e0*
92.0088
85.3122
99.8461
68.2409
408917040408846336
57.1429
astatham-gatkSNPtimap_l100_m1_e0het
86.8541
76.8887
99.7875
73.5726
230226920230154923
46.9388
astatham-gatkSNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
68.1319
2902900
astatham-gatkSNPtimap_l100_m1_e0homalt
99.6258
99.3318
99.9216
57.0466
17840120178401413
92.8571
astatham-gatkSNPtimap_l100_m2_e0*
92.0782
85.4292
99.8496
69.7884
418277134418206336
57.1429
astatham-gatkSNPtimap_l100_m2_e0het
86.9897
77.0982
99.7928
74.7072
236097013236024923
46.9388
astatham-gatkSNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
69.6970
3003000
astatham-gatkSNPtimap_l100_m2_e0homalt
99.6302
99.3391
99.9231
59.5727
18188121181881413
92.8571
astatham-gatkSNPtimap_l100_m2_e1*
92.0971
85.4623
99.8489
69.7778
422917194422846436
56.2500
astatham-gatkSNPtimap_l100_m2_e1het
87.0268
77.1576
99.7911
74.6941
238887072238815023
46.0000
astatham-gatkSNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
69.0000
3103100
astatham-gatkSNPtimap_l100_m2_e1homalt
99.6312
99.3403
99.9239
59.5512
18372122183721413
92.8571
astatham-gatkSNPtimap_l125_m0_e0*
92.8568
86.9378
99.6407
77.9287
110951667110934020
50.0000
astatham-gatkSNPtimap_l125_m0_e0het
89.1339
80.7092
99.5223
81.9410
6669159466673213
40.6250
astatham-gatkSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
71.4286
80800
astatham-gatkSNPtimap_l125_m0_e0homalt
99.0916
98.3745
99.8192
66.7668
441873441887
87.5000
astatham-gatkSNPtimap_l125_m1_e0*
91.1797
83.9407
99.7852
74.5658
246244711246205329
54.7170
astatham-gatkSNPtimap_l125_m1_e0het
85.4533
74.7728
99.6933
79.6242
136584608136544219
45.2381
astatham-gatkSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
64.1791
2402400
astatham-gatkSNPtimap_l125_m1_e0homalt
99.4818
99.0675
99.8996
63.1497
10942103109421110
90.9091
astatham-gatkSNPtimap_l125_m2_e0*
91.2512
84.0571
99.7920
76.0047
254344824254305329
54.7170
astatham-gatkSNPtimap_l125_m2_e0het
85.6054
75.0000
99.7041
80.6061
141574719141534219
45.2381
astatham-gatkSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
70.0000
2402400
astatham-gatkSNPtimap_l125_m2_e0homalt
99.4872
99.0755
99.9023
65.7910
11253105112531110
90.9091
astatham-gatkSNPtimap_l125_m2_e1*
91.2494
84.0525
99.7941
76.0425
256944875256905329
54.7170
astatham-gatkSNPtimap_l125_m2_e1het
85.6126
75.0092
99.7074
80.6356
143174770143134219
45.2381
astatham-gatkSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
70.0000
2402400
astatham-gatkSNPtimap_l125_m2_e1homalt
99.4917
99.0836
99.9032
65.8143
11353105113531110
90.9091
astatham-gatkSNPtimap_l150_m0_e0*
93.2170
87.6733
99.5090
82.5398
689296968903415
44.1176
astatham-gatkSNPtimap_l150_m0_e0het
89.8677
82.0483
99.3346
85.7819
41829154180289
32.1429
astatham-gatkSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
astatham-gatkSNPtimap_l150_m0_e0homalt
98.9039
98.0442
99.7788
72.9781
270754270766
100.0000
astatham-gatkSNPtimap_l150_m1_e0*
91.3534
84.2837
99.7178
78.6410
166143098166104726
55.3191
astatham-gatkSNPtimap_l150_m1_e0het
85.9873
75.6508
99.5954
82.9552
9358301293543818
47.3684
astatham-gatkSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
70.5882
1501500
astatham-gatkSNPtimap_l150_m1_e0homalt
99.3483
98.8263
99.8759
68.2477
724186724198
88.8889
astatham-gatkSNPtimap_l150_m2_e0*
91.3750
84.3165
99.7232
79.9461
172953217172914827
56.2500
astatham-gatkSNPtimap_l150_m2_e0het
86.0268
75.7084
99.6015
83.8910
9752312997483919
48.7179
astatham-gatkSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
74.1379
1501500
astatham-gatkSNPtimap_l150_m2_e0homalt
99.3599
98.8445
99.8806
70.6148
752888752898
88.8889
astatham-gatkSNPtimap_l150_m2_e1*
91.3679
84.3025
99.7259
80.0126
174703253174664827
56.2500
astatham-gatkSNPtimap_l150_m2_e1het
86.0111
75.6819
99.6055
83.9600
9850316598463919
48.7179