PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2101-2150 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | * | map_l125_m2_e0 | * | 81.2942 | 87.1691 | 76.1613 | 76.0893 | 40728 | 5995 | 40268 | 12604 | 2812 | 22.3104 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | het | 77.4707 | 90.4768 | 67.7339 | 78.1138 | 26526 | 2792 | 26255 | 12507 | 2731 | 21.8358 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m2_e0 | homalt | 89.6412 | 81.6863 | 99.3125 | 67.9435 | 14193 | 3182 | 14013 | 97 | 81 | 83.5052 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | * | 81.3800 | 87.2421 | 76.2560 | 76.1127 | 41180 | 6022 | 40707 | 12675 | 2820 | 22.2485 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | het | 77.5666 | 90.5162 | 67.8585 | 78.1432 | 26829 | 2811 | 26551 | 12576 | 2737 | 21.7637 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m2_e1 | homalt | 89.7095 | 81.8047 | 99.3055 | 67.9368 | 14342 | 3190 | 14156 | 99 | 83 | 83.8384 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | * | 77.8146 | 81.9066 | 74.1121 | 85.6738 | 9855 | 2177 | 9745 | 3404 | 959 | 28.1727 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | het | 75.3571 | 86.4106 | 66.8109 | 87.0439 | 6861 | 1079 | 6796 | 3376 | 934 | 27.6659 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m0_e0 | homalt | 84.1702 | 73.1719 | 99.0595 | 77.5693 | 2992 | 1097 | 2949 | 28 | 25 | 89.2857 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | * | 79.3251 | 85.8375 | 73.7311 | 78.7422 | 26274 | 4335 | 25974 | 9254 | 2118 | 22.8874 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | het | 75.5953 | 89.9876 | 65.1719 | 80.5681 | 17382 | 1934 | 17193 | 9188 | 2064 | 22.4641 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m1_e0 | homalt | 87.8735 | 78.8344 | 99.2540 | 70.4677 | 8887 | 2386 | 8781 | 66 | 54 | 81.8182 | |
| anovak-vg | SNP | * | map_l150_m2_e0 | * | 79.6445 | 85.9852 | 74.1747 | 80.0306 | 27388 | 4464 | 27076 | 9427 | 2180 | 23.1251 | |
| anovak-vg | SNP | * | map_l150_m2_e0 | het | 75.9821 | 90.0512 | 65.7151 | 81.6508 | 18130 | 2003 | 17933 | 9356 | 2121 | 22.6699 | |
| anovak-vg | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m2_e0 | homalt | 88.0238 | 79.0922 | 99.2294 | 72.9596 | 9253 | 2446 | 9143 | 71 | 59 | 83.0986 | |
| anovak-vg | SNP | * | map_l150_m2_e1 | * | 79.7323 | 86.0571 | 74.2735 | 80.0613 | 27719 | 4491 | 27398 | 9490 | 2194 | 23.1191 | |
| anovak-vg | SNP | * | map_l150_m2_e1 | het | 76.0838 | 90.1144 | 65.8336 | 81.6880 | 18350 | 2013 | 18149 | 9419 | 2135 | 22.6669 | |
| anovak-vg | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m2_e1 | homalt | 88.0784 | 79.1748 | 99.2382 | 72.9549 | 9364 | 2463 | 9249 | 71 | 59 | 83.0986 | |
| anovak-vg | SNP | * | map_l250_m0_e0 | * | 72.9992 | 77.5176 | 68.9786 | 95.8110 | 1655 | 480 | 1641 | 738 | 163 | 22.0867 | |
| anovak-vg | SNP | * | map_l250_m0_e0 | het | 70.3786 | 80.8101 | 62.3323 | 96.0946 | 1217 | 289 | 1208 | 730 | 157 | 21.5068 | |
| anovak-vg | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | * | map_l250_m0_e0 | homalt | 81.4814 | 69.6343 | 98.1859 | 93.8468 | 438 | 191 | 433 | 8 | 6 | 75.0000 | |
| anovak-vg | SNP | * | map_l250_m1_e0 | * | 74.3435 | 81.2102 | 68.5475 | 91.2491 | 5865 | 1357 | 5819 | 2670 | 600 | 22.4719 | |
| anovak-vg | SNP | * | map_l250_m1_e0 | het | 70.8783 | 85.8044 | 60.3757 | 91.8863 | 4080 | 675 | 4050 | 2658 | 592 | 22.2724 | |
| anovak-vg | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m1_e0 | homalt | 83.7735 | 72.4320 | 99.3262 | 87.5733 | 1784 | 679 | 1769 | 12 | 8 | 66.6667 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | * | 75.1311 | 81.7121 | 69.5312 | 91.5463 | 6443 | 1442 | 6392 | 2801 | 650 | 23.2060 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | het | 71.8617 | 86.4074 | 61.5077 | 92.1188 | 4488 | 706 | 4455 | 2788 | 641 | 22.9914 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m2_e0 | homalt | 83.9868 | 72.7476 | 99.3333 | 88.4225 | 1954 | 732 | 1937 | 13 | 9 | 69.2308 | |
| anovak-vg | SNP | * | map_l250_m2_e1 | * | 75.2143 | 81.7954 | 69.6133 | 91.5868 | 6533 | 1454 | 6481 | 2829 | 654 | 23.1177 | |
| anovak-vg | SNP | * | map_l250_m2_e1 | het | 71.9604 | 86.4932 | 61.6087 | 92.1600 | 4553 | 711 | 4519 | 2816 | 645 | 22.9048 | |
| anovak-vg | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m2_e1 | homalt | 84.0320 | 72.8109 | 99.3418 | 88.4510 | 1979 | 739 | 1962 | 13 | 9 | 69.2308 | |
| anovak-vg | SNP | * | map_siren | * | 88.0035 | 90.6441 | 85.5124 | 59.7358 | 132547 | 13681 | 130863 | 22171 | 5290 | 23.8600 | |
| anovak-vg | SNP | * | map_siren | het | 84.8820 | 91.5981 | 79.0836 | 63.1144 | 83346 | 7645 | 82394 | 21792 | 4974 | 22.8249 | |
| anovak-vg | SNP | * | map_siren | hetalt | 0.0000 | 25.9259 | 0.0000 | 0.0000 | 21 | 60 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_siren | homalt | 93.9262 | 89.1653 | 99.2241 | 49.9600 | 49180 | 5976 | 48469 | 379 | 316 | 83.3773 | |
| anovak-vg | SNP | * | segdup | * | 97.8173 | 97.8231 | 97.8116 | 92.2860 | 27456 | 611 | 27219 | 609 | 236 | 38.7521 | |
| anovak-vg | SNP | * | segdup | het | 97.2290 | 97.3206 | 97.1375 | 93.7111 | 16853 | 464 | 16696 | 492 | 128 | 26.0163 | |
| anovak-vg | SNP | * | segdup | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | segdup | homalt | 98.7938 | 98.6875 | 98.9004 | 87.8317 | 10602 | 141 | 10523 | 117 | 108 | 92.3077 | |
| anovak-vg | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||