PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1851-1900 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 20.4545 | 0.0000 | 0.0000 | 9 | 35 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 67.0246 | 87.7551 | 54.2169 | 78.5530 | 43 | 6 | 45 | 38 | 31 | 81.5789 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 39.0803 | 30.2044 | 55.3435 | 41.1500 | 399 | 922 | 725 | 585 | 494 | 84.4444 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 31.9699 | 22.4138 | 55.7303 | 40.4682 | 104 | 360 | 496 | 394 | 328 | 83.2487 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 22.1529 | 0.0000 | 0.0000 | 142 | 499 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 61.6176 | 70.8333 | 54.5238 | 42.5445 | 153 | 63 | 229 | 191 | 166 | 86.9110 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2866 | 9.6774 | 36.3636 | 52.5862 | 18 | 168 | 20 | 35 | 30 | 85.7143 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 20.7254 | 14.2857 | 37.7358 | 50.4673 | 5 | 30 | 20 | 33 | 29 | 87.8788 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 8.6093 | 0.0000 | 0.0000 | 13 | 138 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 47.4248 | 37.3206 | 65.0316 | 30.6257 | 156 | 262 | 411 | 221 | 186 | 84.1629 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.2391 | 29.5082 | 63.2353 | 29.4815 | 36 | 86 | 301 | 175 | 141 | 80.5714 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 29.9578 | 0.0000 | 0.0000 | 71 | 166 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.2700 | 83.0508 | 70.5128 | 33.8983 | 49 | 10 | 110 | 46 | 45 | 97.8261 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 25.8065 | 15.3846 | 80.0000 | 37.5000 | 2 | 11 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 28.5714 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | * | 61.7886 | 57.5758 | 66.6667 | 85.3933 | 19 | 14 | 26 | 13 | 6 | 46.1538 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | het | 50.0000 | 41.1765 | 63.6364 | 87.5706 | 7 | 10 | 14 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | homalt | 72.7273 | 75.0000 | 70.5882 | 81.1111 | 9 | 3 | 12 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | * | 54.0541 | 50.0000 | 58.8235 | 80.7547 | 57 | 57 | 60 | 42 | 24 | 57.1429 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | het | 45.4208 | 35.5932 | 62.7451 | 82.9431 | 21 | 38 | 32 | 19 | 5 | 26.3158 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 45.4545 | 0.0000 | 0.0000 | 10 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | homalt | 64.7111 | 78.7879 | 54.9020 | 77.9221 | 26 | 7 | 28 | 23 | 19 | 82.6087 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | * | 53.4759 | 49.1379 | 58.6538 | 81.9130 | 57 | 59 | 61 | 43 | 25 | 58.1395 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | het | 44.6377 | 34.4262 | 63.4615 | 83.5962 | 21 | 40 | 33 | 19 | 5 | 26.3158 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 45.4545 | 0.0000 | 0.0000 | 10 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | homalt | 63.9719 | 78.7879 | 53.8462 | 79.8450 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | * | 53.2425 | 49.1379 | 58.0952 | 82.0819 | 57 | 59 | 61 | 44 | 25 | 56.8182 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | het | 44.3378 | 34.4262 | 62.2642 | 83.5913 | 21 | 40 | 33 | 20 | 5 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 45.4545 | 0.0000 | 0.0000 | 10 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | homalt | 63.9719 | 78.7879 | 53.8462 | 80.2281 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | * | 63.1579 | 60.0000 | 66.6667 | 88.4615 | 9 | 6 | 16 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | het | 51.9481 | 44.4444 | 62.5000 | 88.7324 | 4 | 5 | 10 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | homalt | 78.9474 | 83.3333 | 75.0000 | 87.8788 | 5 | 1 | 6 | 2 | 2 | 100.0000 | |