PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7201-7250 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7568 | 12 | 0 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D1_5 | * | * | 99.2637 | 98.9281 | 99.6016 | 61.0980 | 145172 | 1573 | 145253 | 581 | 383 | 65.9208 | |
| asubramanian-gatk | INDEL | D1_5 | * | het | 99.3754 | 99.1025 | 99.6499 | 59.9427 | 86788 | 786 | 86804 | 305 | 126 | 41.3115 | |
| asubramanian-gatk | INDEL | D1_5 | * | hetalt | 96.4051 | 93.9092 | 99.0373 | 64.2371 | 9621 | 624 | 9670 | 94 | 88 | 93.6170 | |
| asubramanian-gatk | INDEL | D1_5 | * | homalt | 99.6476 | 99.6668 | 99.6283 | 62.3701 | 48763 | 163 | 48779 | 182 | 169 | 92.8571 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | * | 99.2090 | 98.6948 | 99.7287 | 58.8075 | 32288 | 427 | 32347 | 88 | 75 | 85.2273 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | het | 99.2391 | 98.6082 | 99.8781 | 56.4759 | 20476 | 289 | 20484 | 25 | 15 | 60.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 94.5568 | 92.7515 | 96.4339 | 73.6698 | 1254 | 98 | 1298 | 48 | 47 | 97.9167 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.7403 | 99.6226 | 99.8582 | 60.0860 | 10558 | 40 | 10565 | 15 | 13 | 86.6667 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | * | 95.6905 | 94.4340 | 96.9809 | 66.6013 | 11554 | 681 | 11564 | 360 | 339 | 94.1667 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | het | 95.2389 | 96.5856 | 93.9292 | 78.7201 | 1669 | 59 | 1671 | 108 | 103 | 95.3704 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 96.4959 | 93.9311 | 99.2046 | 59.5968 | 9596 | 620 | 9604 | 77 | 71 | 92.2078 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 76.5563 | 99.3127 | 62.2845 | 86.2762 | 289 | 2 | 289 | 175 | 165 | 94.2857 | |
| asubramanian-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9607 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9759 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6183 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9387 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 50.6173 | 159 | 0 | 160 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.8131 | 85 | 0 | 86 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.1101 | 74 | 0 | 74 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0814 | 91.6918 | 96.5990 | 62.3710 | 3653 | 331 | 3664 | 129 | 115 | 89.1473 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.7489 | 95.0355 | 96.4732 | 75.4199 | 1340 | 70 | 1313 | 48 | 37 | 77.0833 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.2194 | 86.3886 | 98.8943 | 32.6995 | 1574 | 248 | 1610 | 18 | 16 | 88.8889 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1198 | 98.2713 | 92.1642 | 62.1469 | 739 | 13 | 741 | 63 | 62 | 98.4127 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8741 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3421 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9428 | 98.4681 | 99.4221 | 74.5651 | 63444 | 987 | 63485 | 369 | 305 | 82.6558 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1330 | 98.7273 | 99.5420 | 75.3696 | 32813 | 423 | 32819 | 151 | 102 | 67.5497 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9370 | 94.9441 | 99.0153 | 65.4795 | 8826 | 470 | 8849 | 88 | 83 | 94.3182 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4891 | 99.5708 | 99.4077 | 75.9619 | 21805 | 94 | 21817 | 130 | 120 | 92.3077 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7710 | 96.8925 | 98.6656 | 61.3340 | 30432 | 976 | 30464 | 412 | 353 | 85.6796 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3287 | 97.7902 | 98.8731 | 68.6335 | 13453 | 304 | 13424 | 153 | 111 | 72.5490 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1607 | 93.4776 | 99.0024 | 33.2299 | 8685 | 606 | 8733 | 88 | 82 | 93.1818 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.1512 | 96.0630 | 98.2644 | 67.2067 | 732 | 30 | 736 | 13 | 8 | 61.5385 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.4707 | 97.2414 | 97.7011 | 69.7917 | 423 | 12 | 425 | 10 | 5 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0126 | 79.7101 | 98.2456 | 58.3942 | 55 | 14 | 56 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8342 | 98.4496 | 99.2218 | 63.6492 | 254 | 4 | 255 | 2 | 2 | 100.0000 | |