PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85601-85650 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | ti | func_cds | * | 99.9420 | 99.9492 | 99.9347 | 23.0636 | 13780 | 7 | 13778 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | SNP | ti | func_cds | het | 99.9236 | 99.9530 | 99.8942 | 23.9564 | 8500 | 4 | 8498 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | func_cds | homalt | 99.9716 | 99.9431 | 100.0000 | 21.4775 | 5272 | 3 | 5272 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.5532 | 99.4766 | 99.6299 | 68.0748 | 3231 | 17 | 3230 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.3569 | 99.3083 | 99.4056 | 69.7301 | 2010 | 14 | 2007 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.6140 | 95.6140 | 95.6140 | 96.1745 | 109 | 5 | 109 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4699 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.5714 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0888 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | * | 98.7675 | 98.5691 | 98.9667 | 80.4011 | 2962 | 43 | 2969 | 31 | 18 | 58.0645 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | het | 98.4530 | 98.2748 | 98.6318 | 80.8695 | 1652 | 29 | 1658 | 23 | 15 | 65.2174 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | homalt | 99.5047 | 99.4224 | 99.5871 | 77.9738 | 1205 | 7 | 1206 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | * | 98.8177 | 98.5836 | 99.0530 | 94.2377 | 1044 | 15 | 1046 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | het | 98.7928 | 98.6989 | 98.8868 | 94.8759 | 531 | 7 | 533 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | hetalt | 95.6522 | 91.6667 | 100.0000 | 96.7407 | 44 | 4 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | segdup | homalt | 99.1543 | 99.1543 | 99.1543 | 92.6746 | 469 | 4 | 469 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 59.2593 | 22 | 0 | 22 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.6061 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | * | * | 96.3018 | 94.7670 | 97.8872 | 49.6208 | 23524 | 1299 | 23536 | 508 | 491 | 96.6535 | |
| rpoplin-dv42 | INDEL | I6_15 | * | het | 96.6553 | 97.2291 | 96.0883 | 56.6301 | 9755 | 278 | 9752 | 397 | 383 | 96.4736 | |
| rpoplin-dv42 | INDEL | I6_15 | * | hetalt | 94.8036 | 90.5625 | 99.4614 | 37.3252 | 7744 | 807 | 7756 | 42 | 40 | 95.2381 | |
| rpoplin-dv42 | INDEL | I6_15 | * | homalt | 97.7056 | 96.5700 | 98.8683 | 48.6914 | 6025 | 214 | 6028 | 69 | 68 | 98.5507 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | * | 96.7965 | 95.1586 | 98.4917 | 56.6586 | 4560 | 232 | 4571 | 70 | 64 | 91.4286 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | het | 96.6823 | 95.9660 | 97.4093 | 58.8413 | 2260 | 95 | 2256 | 60 | 55 | 91.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | hetalt | 95.0851 | 90.9240 | 99.6454 | 54.5161 | 1112 | 111 | 1124 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | homalt | 98.6717 | 97.8583 | 99.4987 | 53.9792 | 1188 | 26 | 1191 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | * | 93.3249 | 90.3259 | 96.5299 | 36.1005 | 7927 | 849 | 7928 | 285 | 281 | 98.5965 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | hetalt | 95.0099 | 90.5470 | 99.9355 | 28.7042 | 7730 | 807 | 7742 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | homalt | 48.8189 | 100.0000 | 32.2917 | 75.1295 | 31 | 0 | 31 | 65 | 65 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 36.0000 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.2466 | 79.7847 | 96.2482 | 67.1252 | 667 | 169 | 667 | 26 | 23 | 88.4615 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 87.8389 | 85.4251 | 90.3930 | 78.7175 | 211 | 36 | 207 | 22 | 19 | 86.3636 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 86.7813 | 76.7925 | 99.7573 | 48.6284 | 407 | 123 | 411 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.2883 | 83.0508 | 94.2308 | 77.3913 | 49 | 10 | 49 | 3 | 3 | 100.0000 | |