PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82201-82250 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.5933 | 99.7860 | 95.4949 | 53.0674 | 2798 | 6 | 2798 | 132 | 131 | 99.2424 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4422 | 96.4266 | 98.4794 | 49.9423 | 10686 | 396 | 10686 | 165 | 162 | 98.1818 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2450 | 95.6628 | 96.8343 | 65.6357 | 3132 | 142 | 3120 | 102 | 100 | 98.0392 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6184 | 95.3476 | 100.0000 | 25.5017 | 5185 | 253 | 5197 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6672 | 99.9578 | 97.4095 | 54.3286 | 2369 | 1 | 2369 | 63 | 62 | 98.4127 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4153 | 95.0558 | 97.8143 | 50.9442 | 14054 | 731 | 14052 | 314 | 309 | 98.4076 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5788 | 95.2991 | 95.8600 | 66.1112 | 4237 | 209 | 4191 | 181 | 178 | 98.3425 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.2695 | 92.8074 | 100.0000 | 26.8341 | 6658 | 516 | 6702 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8473 | 99.8104 | 95.9599 | 54.4297 | 3159 | 6 | 3159 | 133 | 131 | 98.4962 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.6075 | 95.2464 | 98.0080 | 54.6884 | 16831 | 840 | 16827 | 342 | 333 | 97.3684 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.9360 | 95.2617 | 96.6200 | 68.1344 | 5569 | 277 | 5517 | 193 | 187 | 96.8912 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4144 | 93.0885 | 99.9868 | 28.9050 | 7502 | 557 | 7550 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.9932 | 99.8407 | 96.2129 | 58.2077 | 3760 | 6 | 3760 | 148 | 145 | 97.9730 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9441 | 95.7602 | 98.1576 | 42.5181 | 9057 | 401 | 9057 | 170 | 166 | 97.6471 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.2210 | 94.2188 | 96.2448 | 59.6025 | 2575 | 158 | 2563 | 100 | 97 | 97.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3984 | 94.9288 | 100.0000 | 24.8387 | 4530 | 242 | 4542 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.2138 | 99.9488 | 96.5381 | 40.8253 | 1952 | 1 | 1952 | 70 | 69 | 98.5714 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.1064 | 76.2066 | 86.6795 | 41.5020 | 900 | 281 | 898 | 138 | 138 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.1099 | 71.1009 | 100.0000 | 26.0069 | 620 | 252 | 643 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1053 | 96.8944 | 71.2329 | 36.7052 | 156 | 5 | 156 | 63 | 63 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4329 | 98.8722 | 100.0000 | 81.0382 | 263 | 3 | 263 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0228 | 98.0645 | 100.0000 | 82.9213 | 152 | 3 | 152 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.2151 | 37 | 0 | 37 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.6832 | 74 | 0 | 74 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 86.2745 | 77.1930 | 97.7778 | 99.5198 | 44 | 13 | 44 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.6901 | 69.0476 | 100.0000 | 99.4796 | 29 | 13 | 29 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0217 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.7569 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7958 | 97.9116 | 99.6962 | 48.3747 | 3610 | 77 | 3610 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0678 | 96.6163 | 99.5636 | 56.9165 | 1599 | 56 | 1597 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1898 | 98.3926 | 100.0000 | 27.0507 | 1163 | 19 | 1165 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 49.7048 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4036 | 94.8289 | 98.0315 | 47.7581 | 1247 | 68 | 1245 | 25 | 21 | 84.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7499 | 93.8209 | 99.8677 | 23.9437 | 744 | 49 | 755 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.7099 | 100.0000 | 95.5224 | 44.4751 | 192 | 0 | 192 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3616 | 98.9595 | 99.7670 | 33.2686 | 1712 | 18 | 1713 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8539 | 98.1508 | 99.5671 | 42.1053 | 690 | 13 | 690 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 17.6136 | 579 | 5 | 580 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8873 | 100.0000 | 99.7748 | 33.9286 | 443 | 0 | 443 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |