PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81451-81500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7254 | 13 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 96.1877 | 95.9064 | 96.4706 | 94.3428 | 164 | 7 | 164 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 95.5357 | 96.3964 | 94.6903 | 94.5725 | 107 | 4 | 107 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 93.4466 | 54 | 3 | 54 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 96.4578 | 96.1957 | 96.7213 | 94.6460 | 177 | 7 | 177 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 95.9016 | 96.6942 | 95.1220 | 94.7771 | 117 | 4 | 117 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.9937 | 57 | 3 | 57 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 96.4770 | 96.2162 | 96.7391 | 94.7489 | 178 | 7 | 178 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 94.8612 | 118 | 4 | 118 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 94.1418 | 57 | 3 | 57 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_siren | * | 99.1622 | 98.8665 | 99.4596 | 79.2799 | 3489 | 40 | 3497 | 19 | 5 | 26.3158 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | het | 99.0760 | 98.8142 | 99.3392 | 78.2192 | 2250 | 27 | 2255 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.3151 | 78 | 6 | 78 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_siren | homalt | 99.5289 | 99.4007 | 99.6575 | 79.9209 | 1161 | 7 | 1164 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | * | 99.6373 | 99.5467 | 99.7280 | 94.0940 | 1098 | 5 | 1100 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | het | 99.6380 | 99.4220 | 99.8551 | 93.9785 | 688 | 4 | 689 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 94.9219 | 51 | 1 | 52 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.1708 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9934 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9895 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 45.4545 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 53.3333 | 7 | 1 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | * | * | 97.6719 | 96.7155 | 98.6474 | 52.2270 | 25235 | 857 | 25235 | 346 | 333 | 96.2428 | |
| raldana-dualsentieon | INDEL | D6_15 | * | het | 97.8785 | 97.4810 | 98.2792 | 59.3884 | 11300 | 292 | 11251 | 197 | 187 | 94.9239 | |
| raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | * | homalt | 98.7805 | 99.8735 | 97.7111 | 54.0245 | 6318 | 8 | 6318 | 148 | 145 | 97.9730 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | * | 96.9018 | 94.6813 | 99.2289 | 57.2443 | 5020 | 282 | 5019 | 39 | 37 | 94.8718 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | het | 95.7688 | 92.6603 | 99.0931 | 57.6076 | 2891 | 229 | 2841 | 26 | 24 | 92.3077 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | hetalt | 97.2668 | 94.7680 | 99.9010 | 47.1204 | 960 | 53 | 1009 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.4894 | 100.0000 | 98.9839 | 62.5911 | 1169 | 0 | 1169 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | * | 93.9555 | 91.8392 | 96.1717 | 34.6920 | 8294 | 737 | 8290 | 330 | 328 | 99.3939 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | het | 78.4773 | 78.8551 | 78.1030 | 69.3467 | 675 | 181 | 667 | 187 | 185 | 98.9305 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | hetalt | 96.4689 | 93.1788 | 100.0000 | 23.4743 | 7595 | 556 | 7599 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | homalt | 25.1309 | 100.0000 | 14.3713 | 65.4244 | 24 | 0 | 24 | 143 | 143 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8811 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0099 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 51.1364 | 43 | 0 | 43 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.2963 | 29 | 0 | 29 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.8325 | 89.0303 | 94.8168 | 50.9778 | 3498 | 431 | 3494 | 191 | 186 | 97.3822 | |