PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80901-80950 / 86044 show all
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
88.4623
92.1212
85.0829
92.3011
15213154277
25.9259
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
86.0387
90.3226
82.1429
92.1875
11212115255
20.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
96.3260
97.5610
95.1220
92.6391
4013922
100.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.5593
97.6793
93.5294
90.1841
13893314319925
25.2525
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.8252
96.8237
91.0068
91.2594
884299319219
20.6522
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
20200
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9116
99.2110
98.6139
86.9408
503449876
85.7143
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.3380
98.3399
94.4159
89.8856
12442112857619
25.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.8561
97.7330
92.1437
91.1616
776188217014
20.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0381
99.3603
98.7179
86.0756
466346265
83.3333
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.5943
98.9387
96.2859
86.8966
410244412215929
18.2390
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.5543
98.5633
94.6256
88.5760
260738264115021
14.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.2500
30300
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4970
99.5995
99.3948
81.7770
14926147898
88.8889
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2810
98.6274
95.9709
85.0094
143712001436360345
7.4627
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.1549
98.4124
93.9987
87.3444
8988145902257632
5.5556
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
97.0120
1501500
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.2401
98.9858
99.4956
77.2155
53685553262713
48.1481
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.5273
99.1969
97.8668
72.2743
481739486310620
18.8679
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
97.9708
98.8342
97.1223
75.2765
30523631059213
14.1304
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.2963
10100
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.5189
99.8302
99.2095
64.3231
176431757147
50.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200*
80.0000
76.9231
83.3333
97.2758
2062041
25.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200het
72.7273
70.5882
75.0000
97.7654
1251241
25.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
94.1176
88.8889
100.0000
95.1220
81800
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.6831
99.5234
99.8433
60.8736
108595210830177
41.1765
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.6287
99.3874
99.8711
62.1463
697643697590
0.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7805
99.7685
99.7926
58.3234
38789385087
87.5000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.0581
99.5974
96.5657
46.5037
74223073952639
3.4221
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.1050
99.5095
94.8139
49.1046
46662346622553
1.1765
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
68.4211
50511
100.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.7451
99.7462
99.7441
40.9924
27517272875
71.4286
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
77.5681
83.3333
72.5490
91.3413
35737147
50.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
75.5393
80.5556
71.1111
90.6832
29732136
46.1538
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
90.9091
100.0000
83.3333
94.2857
60511
100.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000