PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80751-80800 / 86044 show all
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
98.5507
97.1429
100.0000
93.0712
3413700
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.4343
99.0271
99.8449
39.8008
386838386363
50.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.4125
98.9911
99.8375
43.7900
245325245841
25.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5072
99.1591
99.8579
31.1980
141512140522
100.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200*
66.6667
62.5000
71.4286
97.8261
53521
50.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
98.1685
51500
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
95.9184
02021
50.0000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNPtimap_l100_m0_e0*
81.5832
70.3459
97.0931
83.0504
15315645615231456385
84.4298
qzeng-customSNPtimap_l100_m0_e0het
81.5587
70.9290
95.9360
86.8580
991840659891419349
83.2936
qzeng-customSNPtimap_l100_m0_e0hetalt
83.3333
71.4286
100.0000
89.8990
1041000
qzeng-customSNPtimap_l100_m0_e0homalt
81.6311
69.2951
99.3106
61.6670
5387238753303736
97.2973
qzeng-customSNPtimap_l100_m1_e0*
87.5018
78.7403
98.4572
75.1333
377411019037460587485
82.6235
qzeng-customSNPtimap_l100_m1_e0het
87.3398
78.8625
97.8592
80.1613
23613632923496514414
80.5447
qzeng-customSNPtimap_l100_m1_e0hetalt
81.6327
68.9655
100.0000
88.0952
2092000
qzeng-customSNPtimap_l100_m1_e0homalt
87.7858
78.5523
99.4792
55.9352
141083852139447371
97.2603
qzeng-customSNPtimap_l100_m2_e0*
87.7079
79.0936
98.4279
76.3519
387251023638442614490
79.8046
qzeng-customSNPtimap_l100_m2_e0het
87.5433
79.2078
97.8395
80.9563
24255636724137533415
77.8612
qzeng-customSNPtimap_l100_m2_e0hetalt
82.3529
70.0000
100.0000
88.3978
2192100
qzeng-customSNPtimap_l100_m2_e0homalt
87.9965
78.9175
99.4361
59.4553
144493860142848175
92.5926
qzeng-customSNPtimap_l100_m2_e1*
87.8109
79.2503
98.4448
76.3141
392171026838930615490
79.6748
qzeng-customSNPtimap_l100_m2_e1het
87.6458
79.3605
97.8627
80.9215
24570639024451534415
77.7154
qzeng-customSNPtimap_l100_m2_e1hetalt
83.0189
70.9677
100.0000
87.9121
2292200
qzeng-customSNPtimap_l100_m2_e1homalt
88.0999
79.0797
99.4428
59.4081
146253869144578175
92.5926
qzeng-customSNPtimap_l125_m0_e0*
76.6106
63.8536
95.7374
88.8132
814946138108361304
84.2105
qzeng-customSNPtimap_l125_m0_e0het
76.7738
64.8796
94.0081
91.3630
536129025350341285
83.5777
qzeng-customSNPtimap_l125_m0_e0hetalt
66.6667
50.0000
100.0000
95.0000
44400
qzeng-customSNPtimap_l125_m0_e0homalt
76.3240
61.9906
99.2790
71.5020
2784170727542019
95.0000
qzeng-customSNPtimap_l125_m1_e0*
82.7982
71.8971
97.5960
82.1188
21091824420948516435
84.3023
qzeng-customSNPtimap_l125_m1_e0het
82.7364
72.3585
96.5897
86.1572
13217504913170465385
82.7957
qzeng-customSNPtimap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
87.5000
1681600
qzeng-customSNPtimap_l125_m1_e0homalt
82.9138
71.1453
99.3472
63.5077
7858318777625150
98.0392
qzeng-customSNPtimap_l125_m2_e0*
83.2073
72.4998
97.6254
82.9474
21937832121790530441
83.2075
qzeng-customSNPtimap_l125_m2_e0het
83.1453
72.9498
96.6538
86.6306
13770510613720475387
81.4737
qzeng-customSNPtimap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
88.8889
1681600
qzeng-customSNPtimap_l125_m2_e0homalt
83.3237
71.7644
99.3217
66.9963
8151320780545554
98.1818
qzeng-customSNPtimap_l125_m2_e1*
83.3343
72.6815
97.6462
82.9373
22218835122070532443
83.2707
qzeng-customSNPtimap_l125_m2_e1het
83.2669
73.1126
96.6968
86.6188
13955513213905475387
81.4737
qzeng-customSNPtimap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
88.8889
1681600
qzeng-customSNPtimap_l125_m2_e1homalt
83.4603
71.9759
99.3054
66.9858
8247321181495756
98.2456