PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76651-76700 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | het | 98.3855 | 97.2047 | 99.5955 | 74.1909 | 12310 | 354 | 12310 | 50 | 23 | 46.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | homalt | 99.5815 | 99.2700 | 99.8951 | 66.7961 | 6663 | 49 | 6663 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | * | 99.1686 | 98.5527 | 99.7922 | 67.5463 | 44671 | 656 | 44671 | 93 | 49 | 52.6882 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | het | 98.8381 | 97.9748 | 99.7168 | 68.7996 | 27817 | 575 | 27817 | 79 | 36 | 45.5696 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | homalt | 99.7333 | 99.5504 | 99.9169 | 65.2026 | 16829 | 76 | 16829 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | * | 99.1850 | 98.5896 | 99.7877 | 69.4898 | 46064 | 659 | 46064 | 98 | 49 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | het | 98.8614 | 98.0285 | 99.7086 | 70.3185 | 28740 | 578 | 28740 | 84 | 36 | 42.8571 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | homalt | 99.7405 | 99.5626 | 99.9191 | 67.9668 | 17299 | 76 | 17299 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | * | 99.1837 | 98.5869 | 99.7877 | 69.5422 | 46535 | 667 | 46535 | 99 | 49 | 49.4949 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | het | 98.8584 | 98.0229 | 99.7083 | 70.3755 | 29054 | 586 | 29054 | 85 | 36 | 42.3529 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | homalt | 99.7429 | 99.5665 | 99.9199 | 68.0072 | 17456 | 76 | 17456 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | * | 98.5596 | 97.5316 | 99.6095 | 77.4194 | 11735 | 297 | 11735 | 46 | 22 | 47.8261 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | het | 98.0583 | 96.6751 | 99.4816 | 79.2753 | 7676 | 264 | 7676 | 40 | 17 | 42.5000 | |
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | homalt | 99.5215 | 99.1930 | 99.8523 | 72.7346 | 4056 | 33 | 4056 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | * | 99.0061 | 98.2783 | 99.7447 | 72.1099 | 30082 | 527 | 30082 | 77 | 40 | 51.9481 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | het | 98.6191 | 97.6082 | 99.6512 | 73.3059 | 18854 | 462 | 18854 | 66 | 30 | 45.4545 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.6799 | 99.4589 | 99.9020 | 69.8014 | 11212 | 61 | 11212 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | * | 99.0356 | 98.3329 | 99.7484 | 73.8523 | 31321 | 531 | 31321 | 79 | 40 | 50.6329 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | het | 98.6606 | 97.6854 | 99.6554 | 74.6307 | 19667 | 466 | 19667 | 68 | 30 | 44.1176 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.6916 | 99.4786 | 99.9056 | 72.3853 | 11638 | 61 | 11638 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | * | 99.0401 | 98.3421 | 99.7481 | 73.9108 | 31676 | 534 | 31676 | 80 | 40 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | het | 98.6659 | 97.6968 | 99.6544 | 74.7044 | 19894 | 469 | 19894 | 69 | 30 | 43.4783 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.6950 | 99.4842 | 99.9066 | 72.4121 | 11766 | 61 | 11766 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | * | 97.4261 | 95.7377 | 99.1752 | 91.7964 | 2044 | 91 | 2044 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | het | 96.7742 | 94.6215 | 99.0271 | 92.2359 | 1425 | 81 | 1425 | 14 | 5 | 35.7143 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | homalt | 98.9608 | 98.4102 | 99.5177 | 90.5327 | 619 | 10 | 619 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | * | 98.0684 | 96.6630 | 99.5153 | 86.9145 | 6981 | 241 | 6981 | 34 | 19 | 55.8824 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | het | 97.4601 | 95.6257 | 99.3663 | 87.5048 | 4547 | 208 | 4547 | 29 | 14 | 48.2759 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.2653 | 98.7414 | 99.7948 | 85.6165 | 2432 | 31 | 2432 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | * | 98.1811 | 96.8675 | 99.5309 | 87.5400 | 7638 | 247 | 7638 | 36 | 19 | 52.7778 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | het | 97.5992 | 95.8799 | 99.3814 | 87.8462 | 4980 | 214 | 4980 | 31 | 14 | 45.1613 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.3266 | 98.8459 | 99.8120 | 86.8985 | 2655 | 31 | 2655 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | * | 98.1855 | 96.8824 | 99.5241 | 87.6224 | 7738 | 249 | 7738 | 37 | 19 | 51.3514 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | het | 97.6025 | 95.8967 | 99.3701 | 87.9415 | 5048 | 216 | 5048 | 32 | 14 | 43.7500 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.3346 | 98.8595 | 99.8143 | 86.9517 | 2687 | 31 | 2687 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_siren | * | 99.5283 | 99.1937 | 99.8651 | 53.0102 | 145049 | 1179 | 145051 | 196 | 89 | 45.4082 | |
| ndellapenna-hhga | SNP | * | map_siren | het | 99.3524 | 98.8878 | 99.8214 | 53.1990 | 89979 | 1012 | 89980 | 161 | 58 | 36.0248 | |
| ndellapenna-hhga | SNP | * | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |