PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
301-350 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | * | * | 97.7648 | 98.8356 | 96.7169 | 21.5138 | 3019065 | 35569 | 3006072 | 102041 | 11838 | 11.6012 | |
| ciseli-custom | SNP | * | * | het | 97.1375 | 98.3979 | 95.9090 | 22.9747 | 1843584 | 30017 | 1837235 | 78367 | 939 | 1.1982 | |
| ciseli-custom | SNP | * | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | * | * | homalt | 98.7740 | 99.5427 | 98.0170 | 19.0299 | 1174765 | 5397 | 1168121 | 23632 | 10880 | 46.0393 | |
| ciseli-custom | SNP | ti | * | * | 98.3062 | 98.8974 | 97.7221 | 19.7040 | 2062524 | 22994 | 2057571 | 47963 | 7893 | 16.4564 | |
| ciseli-custom | SNP | ti | * | het | 97.9524 | 98.4710 | 97.4391 | 21.0644 | 1262297 | 19600 | 1259858 | 33111 | 542 | 1.6369 | |
| ciseli-custom | SNP | ti | * | hetalt | 87.1087 | 81.2715 | 93.8492 | 39.4958 | 473 | 109 | 473 | 31 | 17 | 54.8387 | |
| ciseli-custom | SNP | ti | * | homalt | 98.8778 | 99.5909 | 98.1749 | 17.4213 | 799754 | 3285 | 797240 | 14821 | 7334 | 49.4838 | |
| ciseli-custom | SNP | tv | * | * | 96.5740 | 98.6920 | 94.5451 | 25.2127 | 957014 | 12684 | 954909 | 55095 | 4019 | 7.2947 | |
| ciseli-custom | SNP | tv | * | het | 95.4085 | 98.2395 | 92.7361 | 26.7935 | 581287 | 10417 | 580583 | 45476 | 409 | 0.8994 | |
| ciseli-custom | SNP | tv | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | tv | * | homalt | 98.4608 | 99.4400 | 97.5007 | 22.4395 | 375011 | 2112 | 373610 | 9577 | 3591 | 37.4961 | |
| ckim-dragen | INDEL | * | * | * | 99.1359 | 99.1574 | 99.1143 | 60.3466 | 341639 | 2903 | 341303 | 3050 | 2010 | 65.9016 | |
| ckim-dragen | INDEL | * | * | het | 99.4503 | 99.5962 | 99.3048 | 61.2221 | 193349 | 784 | 192841 | 1350 | 335 | 24.8148 | |
| ckim-dragen | INDEL | * | * | hetalt | 95.9597 | 92.4793 | 99.7124 | 57.0557 | 23339 | 1898 | 23575 | 68 | 68 | 100.0000 | |
| ckim-dragen | INDEL | * | * | homalt | 99.2636 | 99.8234 | 98.7101 | 59.5235 | 124951 | 221 | 124887 | 1632 | 1607 | 98.4681 | |
| ckim-dragen | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | * | * | 76.5957 | 90.0000 | 66.6667 | 87.3684 | 9 | 1 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | * | hetalt | 80.0000 | 100.0000 | 66.6667 | 87.3684 | 1 | 0 | 8 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | * | * | 80.0000 | 100.0000 | 66.6667 | 88.4615 | 7 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 66.6667 | 88.4615 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | * | * | 97.1268 | 97.5531 | 96.7043 | 72.5515 | 6618 | 166 | 6602 | 225 | 138 | 61.3333 | |
| ckim-dragen | INDEL | D16_PLUS | * | het | 97.5880 | 99.0820 | 96.1385 | 80.1270 | 3130 | 29 | 2888 | 116 | 38 | 32.7586 | |
| ckim-dragen | INDEL | D16_PLUS | * | hetalt | 96.2097 | 93.3782 | 99.2184 | 39.1860 | 1805 | 128 | 2031 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | * | homalt | 97.0588 | 99.4681 | 94.7635 | 72.2066 | 1683 | 9 | 1683 | 93 | 84 | 90.3226 | |
| ckim-dragen | INDEL | D1_5 | * | * | 99.4199 | 99.4105 | 99.4294 | 60.9956 | 145880 | 865 | 145840 | 837 | 396 | 47.3118 | |
| ckim-dragen | INDEL | D1_5 | * | het | 99.5957 | 99.7625 | 99.4294 | 59.4097 | 87366 | 208 | 87308 | 501 | 64 | 12.7745 | |
| ckim-dragen | INDEL | D1_5 | * | hetalt | 96.7193 | 94.0654 | 99.5273 | 61.7567 | 9637 | 608 | 9685 | 46 | 46 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | * | homalt | 99.6542 | 99.8998 | 99.4098 | 63.4062 | 48877 | 49 | 48847 | 290 | 286 | 98.6207 | |
| ckim-dragen | INDEL | D6_15 | * | * | 97.9198 | 97.6928 | 98.1478 | 56.3201 | 25490 | 602 | 25488 | 481 | 433 | 90.0208 | |
| ckim-dragen | INDEL | D6_15 | * | het | 99.2490 | 99.4651 | 99.0338 | 63.3339 | 11530 | 62 | 11480 | 112 | 67 | 59.8214 | |
| ckim-dragen | INDEL | D6_15 | * | hetalt | 96.4645 | 93.5894 | 99.5217 | 32.8589 | 7650 | 524 | 7699 | 37 | 37 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | * | homalt | 97.3161 | 99.7471 | 95.0008 | 59.2976 | 6310 | 16 | 6309 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | I16_PLUS | * | * | 97.2529 | 96.3306 | 98.1932 | 70.5888 | 6143 | 234 | 6141 | 113 | 94 | 83.1858 | |
| ckim-dragen | INDEL | I16_PLUS | * | het | 98.7584 | 98.3444 | 99.1760 | 75.9243 | 2673 | 45 | 2648 | 22 | 6 | 27.2727 | |
| ckim-dragen | INDEL | I16_PLUS | * | hetalt | 95.3433 | 91.2297 | 99.8454 | 58.3691 | 1914 | 184 | 1937 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | * | homalt | 97.0983 | 99.6797 | 94.6472 | 70.1850 | 1556 | 5 | 1556 | 88 | 85 | 96.5909 | |
| ckim-dragen | INDEL | I1_5 | * | * | 99.2774 | 99.1830 | 99.3720 | 58.7161 | 149433 | 1231 | 149372 | 944 | 540 | 57.2034 | |
| ckim-dragen | INDEL | I1_5 | * | het | 99.4703 | 99.6091 | 99.3319 | 60.8221 | 78732 | 309 | 78650 | 529 | 129 | 24.3856 | |
| ckim-dragen | INDEL | I1_5 | * | hetalt | 96.2953 | 92.8718 | 99.9809 | 60.6438 | 10397 | 798 | 10451 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | * | homalt | 99.5565 | 99.7948 | 99.3194 | 55.1956 | 60304 | 124 | 60271 | 413 | 409 | 99.0315 | |
| ckim-dragen | INDEL | I6_15 | * | * | 97.2249 | 96.4630 | 97.9990 | 52.8733 | 23945 | 878 | 23949 | 489 | 448 | 91.6155 | |
| ckim-dragen | INDEL | I6_15 | * | het | 98.9990 | 98.7043 | 99.2956 | 59.4838 | 9903 | 130 | 9867 | 70 | 31 | 44.2857 | |