PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1714 1715 1716 1717 1718 1719 1720 1721 » 85851-85900 / 86044 show all
astatham-gatk	INDEL	I16_PLUS	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	73.3333	4	0	4	0	0
astatham-gatk	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
astatham-gatk	INDEL	I16_PLUS	tech_badpromoters	hetalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
astatham-gatk	INDEL	I1_5	decoy	*		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	decoy	het		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
astatham-gatk	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	30.4094	119	0	119	0	0
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8636	1	0	1	0	0
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.6667	1	0	1	0	0
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.6709	88.0952	100.0000	59.3407	74	10	74	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8584	1	0	1	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.5517	1	0	1	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.1818	96.4286	100.0000	75.1152	108	4	108	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.1597	98.3333	100.0000	81.3880	59	1	59	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.7905	86.5506	100.0000	38.2131	547	85	574	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.9933	1	0	1	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.9843	1	0	1	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7919	97.6127	100.0000	42.4274	1104	27	1110	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.3995	94.9309	100.0000	39.7222	206	11	217	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.0731	311	2	311	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	97.7778	95.6522	100.0000	8.3333	22	1	22	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
astatham-gatk	INDEL	I1_5	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	93.9597	9	0	9	0	0
astatham-gatk	INDEL	I1_5	map_l100_m1_e0	hetalt	97.6744	95.4545	100.0000	88.5246	42	2	42	0	0
astatham-gatk	INDEL	I1_5	map_l100_m2_e0	hetalt	97.6744	95.4545	100.0000	89.4207	42	2	42	0	0
astatham-gatk	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.3827	43	2	43	0	0
astatham-gatk	INDEL	I1_5	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	96.2963	4	0	4	0	0
astatham-gatk	INDEL	I1_5	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	93.1452	17	0	17	0	0
astatham-gatk	INDEL	I1_5	map_l125_m2_e0	hetalt	100.0000	100.0000	100.0000	93.2862	19	0	19	0	0
astatham-gatk	INDEL	I1_5	map_l125_m2_e1	hetalt	100.0000	100.0000	100.0000	93.4028	19	0	19	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge