PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
451-500 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5230 | 99.3610 | 99.6855 | 53.7118 | 311 | 2 | 317 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | func_cds | homalt | 99.5595 | 100.0000 | 99.1228 | 33.5277 | 226 | 0 | 226 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.2479 | 94.7075 | 55.8292 | 51.1236 | 340 | 19 | 340 | 269 | 269 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | homalt | 99.6541 | 99.4316 | 99.8777 | 84.3152 | 2449 | 14 | 2449 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | homalt | 99.6642 | 99.4415 | 99.8878 | 85.5934 | 2671 | 15 | 2671 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | homalt | 99.6681 | 99.4481 | 99.8891 | 85.6712 | 2703 | 15 | 2703 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.9377 | 87.2897 | 99.3671 | 71.9361 | 467 | 68 | 471 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.8908 | 9 | 7 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.8406 | 90.4762 | 55.5556 | 99.9404 | 19 | 2 | 20 | 16 | 16 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.5171 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | segdup | homalt | 99.7490 | 99.9628 | 99.5362 | 88.2598 | 10739 | 4 | 10731 | 50 | 50 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8304 | 69.7614 | 98.9490 | 45.2532 | 1871 | 811 | 1883 | 20 | 20 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | * | hetalt | 99.1449 | 99.4845 | 98.8075 | 41.3000 | 579 | 3 | 580 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 37.5000 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.5177 | 76.8147 | 99.0264 | 30.1942 | 709 | 214 | 712 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.9695 | 98.0392 | 99.9176 | 57.2234 | 1200 | 24 | 1213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 100.0000 | 86.6667 | 86.3636 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | homalt | 99.6825 | 100.0000 | 99.3671 | 91.5023 | 473 | 0 | 471 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 100.0000 | 86.6667 | 86.3636 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | hetalt | 96.8057 | 94.1946 | 99.5656 | 57.9927 | 1152 | 71 | 1146 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | homalt | 53.2110 | 93.5484 | 37.1795 | 63.3803 | 29 | 2 | 29 | 49 | 49 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.7712 | 99.9233 | 30.6546 | 1308 | 3 | 1302 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0190 | 98.1121 | 99.9429 | 58.3888 | 1715 | 33 | 1750 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8729 | 99.7825 | 99.9635 | 34.6365 | 2752 | 6 | 2741 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.9057 | 92.6415 | 99.4083 | 55.1724 | 491 | 39 | 504 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 68.6170 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.2676 | 68.5714 | 96.7742 | 85.1675 | 24 | 11 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 23.7460 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | homalt | 97.0588 | 100.0000 | 94.2857 | 54.5455 | 33 | 0 | 33 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.3154 | 93.3884 | 99.4318 | 53.2537 | 339 | 24 | 350 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 91.6667 | 87.5000 | 70.7317 | 22 | 2 | 21 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | het | 93.3333 | 89.7436 | 97.2222 | 44.6154 | 35 | 4 | 35 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 61.5809 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1262 | 97.3404 | 98.9247 | 60.0858 | 183 | 5 | 184 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | homalt | 99.7358 | 99.5369 | 99.9354 | 58.2970 | 7738 | 36 | 7738 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0671 | 97.7492 | 98.3871 | 62.2871 | 304 | 7 | 305 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6797 | 98.6928 | 98.6667 | 68.1529 | 151 | 2 | 148 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.5882 | 83.6957 | 98.7179 | 55.6818 | 77 | 15 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6129 | 85.5422 | 98.6111 | 44.6154 | 71 | 12 | 71 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.3899 | 96.1290 | 98.6842 | 79.5699 | 149 | 6 | 150 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.3752 | 93.1818 | 97.6744 | 77.3684 | 41 | 3 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.3756 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0306 | 96.7239 | 99.3730 | 52.6355 | 620 | 21 | 634 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6562 | 96.0265 | 99.3421 | 59.0296 | 145 | 6 | 151 | 1 | 1 | 100.0000 | |