PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
101-150 / 86044 show all | |||||||||||||||
rpoplin-dv42 | SNP | * | segdup | homalt | 99.8140 | 99.8883 | 99.7398 | 89.1939 | 10731 | 12 | 10731 | 28 | 28 | 100.0000 | |
rpoplin-dv42 | SNP | * | map_siren | homalt | 99.7831 | 99.6882 | 99.8783 | 53.6066 | 54984 | 172 | 54983 | 67 | 63 | 94.0299 | |
rpoplin-dv42 | SNP | * | map_l250_m2_e1 | homalt | 98.7018 | 97.9029 | 99.5138 | 87.8305 | 2661 | 57 | 2661 | 13 | 13 | 100.0000 | |
rpoplin-dv42 | SNP | * | map_l250_m2_e0 | homalt | 98.7237 | 97.9151 | 99.5458 | 87.7612 | 2630 | 56 | 2630 | 12 | 12 | 100.0000 | |
rpoplin-dv42 | SNP | * | map_l250_m1_e0 | homalt | 98.6481 | 97.7670 | 99.5453 | 86.6597 | 2408 | 55 | 2408 | 11 | 11 | 100.0000 | |
rpoplin-dv42 | SNP | * | map_l250_m0_e0 | homalt | 97.8208 | 96.3434 | 99.3443 | 91.6882 | 606 | 23 | 606 | 4 | 4 | 100.0000 | |
rpoplin-dv42 | SNP | * | map_l150_m2_e1 | homalt | 99.3508 | 98.9854 | 99.7189 | 73.6505 | 11707 | 120 | 11707 | 33 | 32 | 96.9697 | |
rpoplin-dv42 | SNP | * | map_l150_m2_e0 | homalt | 99.3437 | 98.9743 | 99.7158 | 73.6127 | 11579 | 120 | 11579 | 33 | 32 | 96.9697 | |
rpoplin-dv42 | SNP | * | map_l150_m1_e0 | homalt | 99.3277 | 98.9444 | 99.7139 | 71.2907 | 11154 | 119 | 11154 | 32 | 31 | 96.8750 | |
rpoplin-dv42 | SNP | * | map_l150_m0_e0 | homalt | 98.7551 | 97.9702 | 99.5527 | 75.0450 | 4006 | 83 | 4006 | 18 | 17 | 94.4444 | |
rpoplin-dv42 | SNP | * | map_l125_m2_e1 | homalt | 99.5110 | 99.2471 | 99.7764 | 69.2363 | 17400 | 132 | 17400 | 39 | 38 | 97.4359 | |
rpoplin-dv42 | SNP | * | map_l125_m2_e0 | homalt | 99.5066 | 99.2403 | 99.7743 | 69.1861 | 17243 | 132 | 17243 | 39 | 38 | 97.4359 | |
rpoplin-dv42 | SNP | * | map_l125_m1_e0 | homalt | 99.4988 | 99.2251 | 99.7740 | 66.6415 | 16774 | 131 | 16774 | 38 | 37 | 97.3684 | |
rpoplin-dv42 | SNP | * | map_l125_m0_e0 | homalt | 99.0933 | 98.5101 | 99.6834 | 69.3810 | 6612 | 100 | 6612 | 21 | 20 | 95.2381 | |
rpoplin-dv42 | SNP | * | map_l100_m2_e1 | homalt | 99.6343 | 99.4783 | 99.7907 | 63.6404 | 27651 | 145 | 27652 | 58 | 54 | 93.1034 | |
rpoplin-dv42 | SNP | * | map_l100_m2_e0 | homalt | 99.6325 | 99.4768 | 99.7886 | 63.6376 | 27379 | 144 | 27380 | 58 | 54 | 93.1034 | |
rpoplin-dv42 | SNP | * | map_l100_m1_e0 | homalt | 99.6291 | 99.4667 | 99.7919 | 61.1512 | 26859 | 144 | 26860 | 56 | 52 | 92.8571 | |
rpoplin-dv42 | SNP | * | map_l100_m0_e0 | homalt | 99.3564 | 98.9759 | 99.7398 | 62.7443 | 11501 | 119 | 11501 | 30 | 27 | 90.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 32.1349 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8741 | 99.9407 | 99.8075 | 37.7626 | 6741 | 4 | 6741 | 13 | 5 | 38.4615 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9507 | 99.9014 | 100.0000 | 54.7268 | 6082 | 6 | 6082 | 0 | 0 | ||
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 93.3333 | 93.3333 | 93.3333 | 95.4955 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7825 | 99.5948 | 99.9709 | 63.5497 | 3441 | 14 | 3441 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7936 | 99.6701 | 99.9173 | 72.0908 | 16919 | 56 | 16921 | 14 | 4 | 28.5714 | |
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7185 | 99.5147 | 99.9231 | 80.8305 | 3896 | 19 | 3898 | 3 | 1 | 33.3333 | |
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 83.7209 | 845 | 7 | 845 | 2 | 1 | 50.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4201 | 99.1588 | 99.6829 | 84.8446 | 943 | 8 | 943 | 3 | 1 | 33.3333 | |
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 99.0990 | 99.0909 | 99.1071 | 90.7970 | 109 | 1 | 111 | 1 | 0 | 0.0000 | |
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7463 | 99.4939 | 100.0000 | 59.2175 | 1376 | 7 | 1376 | 0 | 0 | ||
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7998 | 99.6004 | 100.0000 | 54.6227 | 2243 | 9 | 2243 | 0 | 0 | ||
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8755 | 99.7514 | 100.0000 | 52.7941 | 1605 | 4 | 1605 | 0 | 0 | ||
rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7936 | 99.6701 | 99.9173 | 72.0908 | 16919 | 56 | 16921 | 14 | 4 | 28.5714 | |
rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8787 | 99.8366 | 99.9207 | 56.8327 | 20166 | 33 | 20166 | 16 | 7 | 43.7500 | |
rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7997 | 99.7140 | 99.8855 | 65.5220 | 1743 | 5 | 1745 | 2 | 1 | 50.0000 | |
rpoplin-dv42 | SNP | * | func_cds | homalt | 99.9713 | 99.9427 | 100.0000 | 23.1405 | 6975 | 4 | 6975 | 0 | 0 | ||
rpoplin-dv42 | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | * | HG002compoundhet | homalt | 99.7682 | 99.8331 | 99.7035 | 35.1268 | 10764 | 18 | 10759 | 32 | 29 | 90.6250 | |
rpoplin-dv42 | SNP | * | HG002complexvar | homalt | 99.9511 | 99.9421 | 99.9601 | 19.9304 | 288407 | 167 | 288378 | 115 | 109 | 94.7826 | |
rpoplin-dv42 | SNP | * | * | homalt | 99.9769 | 99.9716 | 99.9821 | 18.2100 | 1179826 | 335 | 1179802 | 211 | 157 | 74.4076 | |
rpoplin-dv42 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 90.7025 | 45 | 2 | 45 | 0 | 0 |