PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84251-84300 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | map_l150_m2_e0 | het | 75.9484 | 90.6371 | 65.3567 | 81.6125 | 6573 | 679 | 6569 | 3482 | 815 | 23.4061 | |
| anovak-vg | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e0 | homalt | 87.3307 | 78.0798 | 99.0683 | 73.9018 | 3188 | 895 | 3190 | 30 | 23 | 76.6667 | |
| anovak-vg | SNP | tv | map_l150_m2_e1 | * | 79.4082 | 86.0633 | 73.7085 | 80.2069 | 9899 | 1603 | 9888 | 3527 | 846 | 23.9864 | |
| anovak-vg | SNP | tv | map_l150_m2_e1 | het | 76.1119 | 90.7050 | 65.5638 | 81.6339 | 6665 | 683 | 6658 | 3497 | 823 | 23.5345 | |
| anovak-vg | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e1 | homalt | 87.3530 | 78.1084 | 99.0798 | 73.8866 | 3229 | 905 | 3230 | 30 | 23 | 76.6667 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | * | 73.9996 | 77.6471 | 70.6794 | 95.9856 | 594 | 171 | 593 | 246 | 53 | 21.5447 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | het | 72.5540 | 81.1189 | 65.6250 | 96.1522 | 464 | 108 | 462 | 242 | 50 | 20.6612 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | map_l250_m0_e0 | homalt | 79.5181 | 67.3575 | 97.0370 | 94.8157 | 130 | 63 | 131 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | * | 73.3649 | 80.4307 | 67.4404 | 91.1516 | 2129 | 518 | 2121 | 1024 | 234 | 22.8516 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | het | 70.5665 | 85.7303 | 59.9607 | 91.6253 | 1532 | 255 | 1526 | 1019 | 231 | 22.6693 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m1_e0 | homalt | 81.8115 | 69.6262 | 99.1667 | 88.3586 | 596 | 260 | 595 | 5 | 3 | 60.0000 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | * | 73.9754 | 80.6384 | 68.3294 | 91.4956 | 2324 | 558 | 2315 | 1073 | 260 | 24.2311 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | het | 71.3723 | 86.1340 | 60.9301 | 91.9101 | 1671 | 269 | 1664 | 1067 | 256 | 23.9925 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m2_e0 | homalt | 81.7550 | 69.5838 | 99.0868 | 89.1941 | 652 | 285 | 651 | 6 | 4 | 66.6667 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | * | 74.0862 | 80.7956 | 68.4057 | 91.5330 | 2356 | 560 | 2347 | 1084 | 260 | 23.9852 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | het | 71.4817 | 86.2595 | 61.0268 | 91.9453 | 1695 | 270 | 1688 | 1078 | 256 | 23.7477 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m2_e1 | homalt | 81.8854 | 69.7674 | 99.0977 | 89.2430 | 660 | 286 | 659 | 6 | 4 | 66.6667 | |
| anovak-vg | SNP | tv | map_siren | * | 87.1130 | 91.2040 | 83.3733 | 62.1288 | 41890 | 4040 | 41755 | 8327 | 1807 | 21.7005 | |
| anovak-vg | SNP | tv | map_siren | het | 83.8130 | 92.8414 | 76.3848 | 65.0646 | 26561 | 2048 | 26517 | 8198 | 1714 | 20.9075 | |
| anovak-vg | SNP | tv | map_siren | hetalt | 0.0000 | 25.9259 | 0.0000 | 0.0000 | 21 | 60 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_siren | homalt | 93.6911 | 88.7935 | 99.1605 | 53.2549 | 15308 | 1932 | 15238 | 129 | 93 | 72.0930 | |
| anovak-vg | SNP | tv | segdup | * | 97.7325 | 97.6676 | 97.7974 | 93.3295 | 8333 | 199 | 8303 | 187 | 80 | 42.7807 | |
| anovak-vg | SNP | tv | segdup | het | 97.1722 | 97.0305 | 97.3143 | 94.5962 | 5130 | 157 | 5109 | 141 | 42 | 29.7872 | |
| anovak-vg | SNP | tv | segdup | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | segdup | homalt | 98.7340 | 98.8882 | 98.5802 | 89.2441 | 3202 | 36 | 3194 | 46 | 38 | 82.6087 | |
| anovak-vg | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | tv | tech_badpromoters | * | 89.6729 | 84.7222 | 95.2381 | 42.7273 | 61 | 11 | 60 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | het | 85.7143 | 81.8182 | 90.0000 | 48.2759 | 27 | 6 | 27 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | tech_badpromoters | homalt | 93.1507 | 87.1795 | 100.0000 | 36.5385 | 34 | 5 | 33 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1588 | 93.9924 | 96.3545 | 65.5291 | 10858 | 694 | 10969 | 415 | 307 | 73.9759 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.5233 | 95.1335 | 95.9163 | 58.0490 | 2815 | 144 | 2842 | 121 | 62 | 51.2397 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.5830 | 94.5931 | 94.5728 | 62.5553 | 1732 | 99 | 1760 | 101 | 45 | 44.5545 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.0857 | 96.0106 | 98.1851 | 47.3483 | 1083 | 45 | 1082 | 20 | 17 | 85.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4762 | 96.4847 | 96.4677 | 49.2144 | 3870 | 141 | 3960 | 145 | 74 | 51.0345 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.7166 | 95.9906 | 95.4442 | 52.1613 | 2442 | 102 | 2514 | 120 | 52 | 43.3333 | |