PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
85251-85300 / 86044 show all
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
55.1228
49.5784
62.0635
51.0444
87618910897554864728
86.1830
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
55.1228
49.5784
62.0635
51.0444
87618910897554864728
86.1830
ckim-isaacSNPtimap_l150_m2_e0*
72.1859
56.5571
99.7506
77.5984
11601891111601295
17.2414
ckim-isaacINDEL*HG002complexvar*
91.9300
88.4153
95.7357
48.5598
6802589136703729861352
45.2780
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.6659
50.7487
89.1009
66.3976
9219894791971125989
87.9111
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.6659
50.7487
89.1009
66.3976
9219894791971125989
87.9111
mlin-fermikitSNPtvmap_sirenhet
80.8694
68.7161
98.2452
51.7745
196598950196513513
0.8547
ckim-vqsrSNP*map_l125_m1_e0het
80.8165
68.4629
98.6098
88.4760
194388954194352743
1.0949
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.5118
50.6716
88.7536
66.8832
9205896191861164976
83.8488
gduggal-snapfbINDEL*HG002compoundhethetalt
76.0060
64.4003
92.7141
74.7872
1621689645739451378
83.8137
jmaeng-gatkSNP*map_sirenhomalt
91.1261
83.7262
99.9610
54.5250
461808976461711818
100.0000
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
51.1782
35.9607
88.7235
60.7545
504689865067644550
85.4037
gduggal-snapfbINDEL**hetalt
71.6867
64.3698
80.8803
78.7792
16245899257701364830
60.8504
ckim-isaacSNPtimap_l150_m2_e1*
72.1848
56.5603
99.7362
77.6680
11721900211721317
22.5806
gduggal-bwaplatINDELD1_5*het
94.1987
89.7070
99.1640
66.4739
78560901478527662219
33.0816
asubramanian-gatkSNPtimap_l150_m1_e0het
42.4790
26.9846
99.7608
94.8360
33389032333684
50.0000
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
46.6247
43.6219
50.0715
62.1939
70009047700369836898
98.7828
ckim-gatkSNP*map_sirenhomalt
91.0516
83.5974
99.9653
55.1658
461099047461001614
87.5000
asubramanian-gatkSNP*map_l150_m1_e0homalt
32.6455
19.5068
100.0000
91.9371
21999074219900
ckim-vqsrSNP*map_l125_m2_e0het
81.2064
69.0122
98.6348
89.1411
202339085202302804
1.4286
gduggal-bwaplatINDEL*HG002compoundhet*
80.3779
69.5961
95.1127
70.6361
208519109208431071677
63.2120
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
mlin-fermikitINDEL*HG002compoundhethetalt
77.7377
63.7887
99.4948
53.3255
160629118161508281
98.7805
mlin-fermikitINDEL**hetalt
77.7361
63.8348
99.3774
60.1130
16110912716282102100
98.0392
ckim-vqsrSNP*map_l125_m2_e1het
81.3082
69.1532
98.6474
89.1453
204979143204942814
1.4235
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
73.1589
71.4116
74.9939
43.9770
228469146337931126811182
99.2368
eyeh-varpipeINDELI6_15**
71.2994
63.0343
82.0590
39.8519
1564791761573434403408
99.0698
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.1515
85.9467
88.3906
61.9558
5616791845597673527082
96.3275
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.1515
85.9467
88.3906
61.9558
5616791845597673527082
96.3275
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
qzeng-customSNP*map_l100_m0_e0*
82.6366
72.0228
96.9194
83.3401
23653918823407744630
84.6774
gduggal-bwaplatSNPtiHG002complexvarhet
97.7064
97.0801
98.3410
19.6959
30557591913061615165589
11.4037
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.3371
62.5265
80.3777
56.0717
1534491961838844892592
57.7411
jmaeng-gatkSNP*map_l100_m0_e0*
82.8475
71.9345
97.6638
84.1509
2362492172362056548
8.4956
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.5705
40.1699
95.6035
76.3129
6193922410155467451
96.5739
ckim-gatkSNP*map_l100_m0_e0*
82.8691
71.9040
97.7802
83.9171
2361492272361053648
8.9552
gduggal-snapfbINDEL*HG002complexvar*
90.4920
87.9994
93.1300
55.3026
6770592336929851122371
46.3811
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
gduggal-bwaplatSNPtimap_l100_m0_e0*
72.8908
57.5582
99.3581
86.0136
125319240125378126
32.0988
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.6024
0.0000
0.0000
569240000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.5382
0.0000
0.0000
509241000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.5382
0.0000
0.0000
509241000
asubramanian-gatkSNPtimap_l150_m2_e0het
44.0116
28.2431
99.6437
94.9202
363892433636135
38.4615
asubramanian-gatkSNPtvHG002complexvar*
98.0754
96.2442
99.9776
22.6117
23690792452368245318
33.9623
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.5379
0.0000
0.0000
509246000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.4843
0.0000
0.0000
459246000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.4843
0.0000
0.0000
459246000
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.3873
0.0000
0.0000
369260000