PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1601-1650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.4790 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1590 | 96.0055 | 98.3406 | 45.9292 | 36388 | 1514 | 49009 | 827 | 740 | 89.4800 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.2868 | 95.8815 | 98.7340 | 45.9174 | 14015 | 602 | 39539 | 507 | 431 | 85.0099 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 93.6792 | 0.0000 | 0.0000 | 12894 | 870 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1247 | 99.5589 | 96.7314 | 45.9773 | 9479 | 42 | 9470 | 320 | 309 | 96.5625 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9358 | 97.0774 | 98.8095 | 45.2536 | 31057 | 935 | 41417 | 499 | 447 | 89.5792 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.9013 | 96.7415 | 99.0893 | 45.1717 | 12113 | 408 | 33076 | 304 | 254 | 83.5526 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4255 | 0.0000 | 0.0000 | 10597 | 508 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7335 | 99.7729 | 97.7156 | 45.5716 | 8347 | 19 | 8341 | 195 | 193 | 98.9744 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3184 | 96.2571 | 98.4034 | 52.4797 | 41713 | 1622 | 54546 | 885 | 782 | 88.3616 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4986 | 96.2849 | 98.7434 | 52.0928 | 17157 | 662 | 43140 | 549 | 461 | 83.9709 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 93.6075 | 0.0000 | 0.0000 | 13135 | 897 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2813 | 99.4514 | 97.1385 | 53.8661 | 11421 | 63 | 11406 | 336 | 321 | 95.5357 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6609 | 96.7085 | 98.6322 | 60.0245 | 63200 | 2151 | 78454 | 1088 | 926 | 85.1103 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7409 | 96.6568 | 98.8496 | 59.7558 | 29461 | 1019 | 60407 | 703 | 560 | 79.6586 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 93.7863 | 0.0000 | 0.0000 | 15667 | 1038 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6906 | 99.4825 | 97.9112 | 60.8903 | 18072 | 94 | 18047 | 385 | 366 | 95.0649 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1110 | 97.3601 | 98.8735 | 45.3846 | 35626 | 966 | 45291 | 516 | 450 | 87.2093 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1220 | 97.1827 | 99.0797 | 47.1607 | 15316 | 444 | 34988 | 325 | 263 | 80.9231 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.4081 | 0.0000 | 0.0000 | 9994 | 481 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8869 | 99.6041 | 98.1799 | 38.4191 | 10316 | 41 | 10303 | 191 | 187 | 97.9058 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.8454 | 79.2480 | 91.2936 | 44.8269 | 1665 | 436 | 2590 | 247 | 237 | 95.9514 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.6343 | 78.9796 | 93.5135 | 45.7111 | 387 | 103 | 2249 | 156 | 148 | 94.8718 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 74.7604 | 0.0000 | 0.0000 | 936 | 316 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 86.3345 | 95.2646 | 78.9352 | 39.3258 | 342 | 17 | 341 | 91 | 89 | 97.8022 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6632 | 99.5223 | 99.8044 | 57.7539 | 28125 | 135 | 28578 | 56 | 39 | 69.6429 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6346 | 99.4826 | 99.7870 | 59.5165 | 16344 | 85 | 17330 | 37 | 22 | 59.4595 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 95.3271 | 0.0000 | 0.0000 | 510 | 25 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8050 | 99.7787 | 99.8314 | 54.7146 | 11271 | 25 | 11248 | 19 | 17 | 89.4737 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.2304 | 79.8387 | 86.9231 | 99.9093 | 99 | 25 | 113 | 17 | 5 | 29.4118 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.0136 | 77.0115 | 85.4545 | 99.8819 | 67 | 20 | 94 | 16 | 4 | 25.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 14 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.1186 | 85.7143 | 95.0000 | 99.9602 | 18 | 3 | 19 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9964 | 98.5399 | 99.4571 | 53.2701 | 19572 | 290 | 21802 | 119 | 100 | 84.0336 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9656 | 98.4786 | 99.4574 | 53.6403 | 10939 | 169 | 15763 | 86 | 67 | 77.9070 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 96.5697 | 0.0000 | 0.0000 | 2590 | 92 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4894 | 99.5224 | 99.4565 | 52.2754 | 6043 | 29 | 6039 | 33 | 33 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.4300 | 93.8983 | 97.0125 | 53.6214 | 2493 | 162 | 3572 | 110 | 76 | 69.0909 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2285 | 93.2851 | 97.2547 | 53.8987 | 903 | 65 | 3082 | 87 | 61 | 70.1149 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.1339 | 0.0000 | 0.0000 | 1101 | 94 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4149 | 99.3902 | 95.5166 | 51.8310 | 489 | 3 | 490 | 23 | 15 | 65.2174 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4613 | 99.2277 | 99.6960 | 43.2493 | 6681 | 52 | 7543 | 23 | 17 | 73.9130 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4416 | 99.2346 | 99.6494 | 43.8167 | 3630 | 28 | 5401 | 19 | 13 | 68.4211 | |