PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
801-850 / 86044 show all
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.2017
97.6736
90.9681
70.0370
4714811234845648114484
93.2031
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
48.9297
42.6581
57.3634
45.6299
63078478646648063764
78.3188
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
74.7445
74.1265
75.3730
58.4574
1472351391470048034251
88.5072
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
80.9421
97.2812
69.3022
61.0030
108063021081647914241
88.5201
eyeh-varpipeINDELD6_15**
75.4633
71.7500
79.5820
47.2482
1872173711865847874643
96.9919
ciseli-customSNPtimap_l100_m2_e0*
86.2627
83.2663
89.4829
71.0430
4076881934070447841327
27.7383
anovak-vgSNPtvmap_l125_m2_e1*
80.9704
87.5908
75.2805
76.3445
1459020671456047811080
22.5894
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
58.8795
58.5755
59.1866
73.4509
49183478691347671577
33.0816
anovak-vgSNPtvmap_l125_m2_e0*
80.8739
87.5311
75.1578
76.3071
1443320561441047631075
22.5698
gduggal-snapvardINDELD1_5HG002complexvarhet
89.8124
96.1325
84.2721
56.4465
199608032551047613355
70.4684
ghariani-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.4136
99.0024
92.0759
67.6063
55076555552874758565
11.8747
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
76.0027
83.0403
70.0649
36.4124
864217651112747543440
72.3601
gduggal-snapfbSNP**homalt
99.6988
99.7992
99.5986
21.4529
1177792237011778604747451
9.5007
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
38.9448
36.3079
41.9946
48.7568
34346024343647464690
98.8201
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
71.4050
68.7947
74.2213
55.0266
1366461981365347424639
97.8279
anovak-vgSNPtvmap_l125_m2_e1het
77.4408
91.5759
67.0858
78.0971
9664889965747381048
22.1190
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9719
33.9924
40.5239
46.0310
32156243321847234680
99.0896
anovak-vgSNPtvmap_l125_m2_e0het
77.3239
91.5342
66.9329
78.0559
9558884955447201043
22.0975
ciseli-customSNPtimap_l100_m1_e0*
86.1026
83.0465
89.3922
69.2811
3980581263974247161317
27.9262
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
85.0606
95.7652
76.5084
52.6827
139986191534347114543
96.4339
anovak-vgSNPtvmap_l125_m1_e0*
80.6396
87.4563
74.8088
74.7170
1400720091398447091051
22.3190
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.9396
39.7316
54.4469
43.4180
54778308562647073701
78.6276
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.4138
96.3627
78.3270
66.2442
1692963917004470598
2.0829
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
91.8743
94.4038
89.4769
44.0923
137998183995546993029
64.4605
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
34.7483
93.6728
21.3304
80.5514
12148212734695107
2.2790
gduggal-snapfbSNPtiHG002complexvarhet
99.0494
99.5771
98.5273
20.1517
31343513313138974692557
11.8713
ciseli-customSNP*map_l150_m2_e1*
78.3942
73.8684
83.5109
81.5923
2379384172375346901163
24.7974
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.2088
43.9090
51.0447
54.2294
48666216488646864047
86.3636
qzeng-customINDEL*HG002compoundhethet
90.0667
93.8691
86.5604
55.7571
38432513009146722782
59.5462
ciseli-customINDELI1_5HG002compoundhethomalt
9.7782
77.5076
5.2183
58.7244
2557425746684563
97.7506
anovak-vgSNPtvmap_l125_m1_e0het
77.0260
91.5169
66.4968
76.6933
9267859926546681021
21.8723
ciseli-customSNP*map_l150_m2_e0*
78.3493
73.8101
83.4833
81.5713
2351083422347346441150
24.7631
ciseli-customSNPtimap_sirenhet
88.8574
85.8902
92.0370
60.6835
535808802534684626118
2.5508
ciseli-customINDELD6_15HG002compoundhethomalt
0.9875
87.5000
0.4965
31.5704
2132346094348
94.3372
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
74.5124
79.7221
69.9419
60.7095
998225391071346042731
59.3180
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
81.5434
97.2452
70.2073
58.5180
108023061084046004440
96.5217
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
71.3041
72.8754
69.7991
45.2762
809530131062945993296
71.6678
jpowers-varprowlINDEL*HG002complexvarhet
92.4718
94.5577
90.4760
57.5873
4369725154368045984462
97.0422
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.7149
82.5790
55.9638
44.4510
1332281581845784118
89.9519
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.2123
28.3742
40.0394
54.5997
17264357304945663071
67.2580
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
44.8798
37.6755
55.4905
73.6943
4185692356854560444
9.7368
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
44.6735
50.6428
39.9631
53.8471
11031075303045523067
67.3770
gduggal-snapvardSNPtiHG002complexvar*
97.8937
96.7473
99.0676
19.7850
4918981653848303945461783
39.2213
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
40.2625
37.4075
43.5894
47.0109
35385920351245454494
98.8779
ciseli-customSNPtvHG002compoundhethet
56.8474
77.9585
44.7336
53.7648
364310303678454489
1.9586
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
53.6228
97.3655
37.0000
47.7504
266172266445364487
98.9198
ciseli-customSNP*map_l150_m1_e0*
77.9234
73.3052
83.1626
80.2472
2243881712240445361124
24.7795