PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
751-800 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5368 | 94.6970 | 98.4496 | 79.6850 | 125 | 7 | 127 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.5987 | 83.2905 | 99.3127 | 36.1667 | 2268 | 455 | 2312 | 16 | 16 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5208 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.7742 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.9823 | 71.2460 | 99.3478 | 28.6268 | 892 | 360 | 914 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8805 | 99.8672 | 99.8937 | 56.0776 | 11281 | 15 | 11280 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9015 | 84.6774 | 98.1132 | 99.9441 | 105 | 19 | 104 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 90.1080 | 83.9080 | 97.2973 | 99.8986 | 73 | 14 | 72 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2023 | 96.7189 | 99.7319 | 41.3917 | 2594 | 88 | 2604 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9496 | 91.0460 | 99.2028 | 32.8775 | 1088 | 107 | 1120 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2924 | 98.8082 | 99.7814 | 28.9596 | 912 | 11 | 913 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.1211 | 89.6000 | 99.1228 | 23.4899 | 112 | 13 | 113 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.8723 | 97.8723 | 97.8723 | 51.5464 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | homalt | 98.7805 | 98.7805 | 98.7805 | 90.9940 | 162 | 2 | 162 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.4093 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | segdup | homalt | 99.2685 | 98.9583 | 99.5807 | 93.3565 | 950 | 10 | 950 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 90.5824 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | * | hetalt | 97.1781 | 94.6735 | 99.8188 | 32.3529 | 551 | 31 | 551 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | HG002complexvar | hetalt | 96.0000 | 92.7536 | 99.4819 | 33.9041 | 192 | 15 | 192 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.8267 | 99.3639 | 98.2952 | 44.3446 | 2187 | 14 | 2191 | 38 | 38 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 40.7143 | 79 | 6 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | tv | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0251 | 98.7500 | 99.3017 | 67.9499 | 1422 | 18 | 1422 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0584 | 100.0000 | 98.1343 | 71.2755 | 525 | 0 | 526 | 10 | 10 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2857 | 52.9412 | 81.8182 | 97.0667 | 9 | 8 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9564 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 100.0000 | 87.5000 | 99.2905 | 12 | 0 | 14 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9627 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.3970 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5739 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.9697 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1923 | 92.5234 | 98.0198 | 73.2238 | 495 | 40 | 495 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 90.1855 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | hetalt | 85.5736 | 75.3846 | 98.9474 | 95.6039 | 98 | 32 | 94 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | * | 97.3333 | 96.0526 | 98.6486 | 91.8051 | 73 | 3 | 73 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | het | 97.4359 | 97.4359 | 97.4359 | 49.3506 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.8235 | 45.4545 | 83.3333 | 84.2105 | 5 | 6 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 81.1020 | 68.6047 | 99.1667 | 72.0280 | 118 | 54 | 119 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9592 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.8693 | 52.6316 | 91.6667 | 69.2308 | 10 | 9 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 59.5731 | 42.4788 | 99.6904 | 42.1147 | 401 | 543 | 322 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.0653 | 42.9847 | 99.6711 | 45.3237 | 337 | 447 | 303 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.2451 | 91.9540 | 98.7805 | 77.4105 | 80 | 7 | 81 | 1 | 1 | 100.0000 | |