PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
1151-1200 / 86044 show all
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
41.3223
100.0000
26.0417
79.7040
23025710
0.0000
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
76.5217
100.0000
61.9718
67.8733
45044272
7.4074
qzeng-customINDELD16_PLUSmap_l100_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
40000
qzeng-customINDELD16_PLUSmap_l125_m0_e0*
59.0909
100.0000
41.9355
97.7714
12013180
0.0000
qzeng-customINDELD16_PLUSmap_l125_m0_e0het
60.6061
100.0000
43.4783
97.1357
9010130
0.0000
qzeng-customINDELD16_PLUSmap_l125_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSmap_l125_m0_e0homalt
54.5455
100.0000
37.5000
98.6395
20350
0.0000
qzeng-customINDELD16_PLUSmap_l125_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
qzeng-customINDELD16_PLUSmap_l125_m1_e0homalt
47.0588
100.0000
30.7692
98.0798
40490
0.0000
qzeng-customINDELD16_PLUSmap_l125_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
qzeng-customINDELD16_PLUSmap_l125_m2_e0homalt
47.0588
100.0000
30.7692
98.1586
40490
0.0000
qzeng-customINDELD16_PLUSmap_l125_m2_e1homalt
47.0588
100.0000
30.7692
98.1716
40490
0.0000
qzeng-customINDELD16_PLUSmap_l150_m0_e0*
60.0000
100.0000
42.8571
98.8553
70680
0.0000
qzeng-customINDELD16_PLUSmap_l150_m0_e0het
71.4286
100.0000
55.5556
98.6861
70540
0.0000
qzeng-customINDELD16_PLUSmap_l150_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSmap_l150_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSmap_l250_m0_e0*
66.6667
100.0000
50.0000
99.7452
10110
0.0000
qzeng-customINDELD16_PLUSmap_l250_m0_e0het
66.6667
100.0000
50.0000
99.5192
10110
0.0000
qzeng-customINDELD16_PLUSmap_l250_m1_e0*
57.1429
100.0000
40.0000
99.0566
40460
0.0000
qzeng-customINDELD16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.6577
30440
0.0000
qzeng-customINDELD16_PLUSmap_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSmap_l250_m2_e0*
62.5000
100.0000
45.4545
99.0081
50560
0.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e0het
66.6667
100.0000
50.0000
98.7362
30440
0.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSmap_l250_m2_e0homalt
50.0000
100.0000
33.3333
99.3697
10120
0.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e1*
62.5000
100.0000
45.4545
99.0152
50560
0.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.7461
30440
0.0000
qzeng-customINDELD16_PLUSmap_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD16_PLUSmap_l250_m2_e1homalt
50.0000
100.0000
33.3333
99.3737
10120
0.0000
qzeng-customINDELD16_PLUSsegduphet
76.6355
100.0000
62.1212
94.9309
37041255
20.0000
qzeng-customINDELD16_PLUSsegduphomalt
84.8485
100.0000
73.6842
95.0262
1201451
20.0000
qzeng-customINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9825
40200
qzeng-customINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9795
20200
qzeng-customINDELD1_5decoyhetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5decoyhomalt
100.0000
100.0000
10000
qzeng-customINDELD1_5func_cds*
99.0536
100.0000
98.1250
39.8496
159015730
0.0000
qzeng-customINDELD1_5func_cdshet
98.2249
100.0000
96.5116
50.0000
8508330
0.0000
qzeng-customINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
21.2766
7407400
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.4100
20200
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3939
20200
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9011
10100
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7805
10100
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
57.5758
1301400
qzeng-customINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9948
10100
qzeng-customINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9933
10100