PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84201-84250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.9420 | 99.9130 | 99.9710 | 37.2906 | 3447 | 3 | 3443 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9532 | 99.9532 | 99.9531 | 38.2523 | 2137 | 1 | 2133 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 35.5315 | 1310 | 1 | 1310 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5507 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | * | 98.7643 | 98.7911 | 98.7375 | 67.3276 | 10950 | 134 | 10949 | 140 | 63 | 45.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | het | 98.5640 | 98.8507 | 98.2789 | 68.7061 | 7139 | 83 | 7138 | 125 | 50 | 40.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | homalt | 99.1768 | 98.6739 | 99.6848 | 64.1086 | 3795 | 51 | 3795 | 12 | 10 | 83.3333 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | * | 99.2751 | 99.2204 | 99.3298 | 64.0760 | 24310 | 191 | 24306 | 164 | 80 | 48.7805 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | het | 99.1180 | 99.1503 | 99.0858 | 64.8238 | 15286 | 131 | 15282 | 141 | 59 | 41.8440 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | homalt | 99.5567 | 99.3365 | 99.7779 | 62.4922 | 8983 | 60 | 8983 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | * | 99.2885 | 99.2370 | 99.3401 | 66.0825 | 24842 | 191 | 24838 | 165 | 80 | 48.4848 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | het | 99.1350 | 99.1697 | 99.1004 | 66.6194 | 15646 | 131 | 15642 | 142 | 59 | 41.5493 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | homalt | 99.5649 | 99.3488 | 99.7820 | 64.8909 | 9154 | 60 | 9154 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | * | 99.2936 | 99.2446 | 99.3427 | 66.1225 | 25092 | 191 | 25088 | 166 | 80 | 48.1928 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | het | 99.1406 | 99.1781 | 99.1032 | 66.6722 | 15807 | 131 | 15803 | 143 | 59 | 41.2587 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | homalt | 99.5691 | 99.3550 | 99.7841 | 64.9074 | 9242 | 60 | 9242 | 20 | 18 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | * | 98.4900 | 98.3713 | 98.6090 | 73.3113 | 6523 | 108 | 6522 | 92 | 52 | 56.5217 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | het | 98.3333 | 98.5458 | 98.1217 | 74.3380 | 4337 | 64 | 4336 | 83 | 43 | 51.8072 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | homalt | 98.8647 | 98.0189 | 99.7251 | 70.7294 | 2177 | 44 | 2177 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | * | 99.1341 | 99.0072 | 99.2613 | 68.8884 | 15857 | 159 | 15855 | 118 | 69 | 58.4746 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | het | 98.9777 | 98.9729 | 98.9825 | 69.6562 | 10022 | 104 | 10020 | 103 | 54 | 52.4272 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | homalt | 99.4262 | 99.0614 | 99.7937 | 67.2577 | 5805 | 55 | 5805 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | * | 99.1468 | 99.0175 | 99.2763 | 70.8786 | 16327 | 162 | 16325 | 119 | 70 | 58.8235 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | het | 98.9943 | 98.9849 | 99.0036 | 71.3714 | 10336 | 106 | 10334 | 104 | 55 | 52.8846 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.5854 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | homalt | 99.4329 | 99.0693 | 99.7991 | 69.7738 | 5961 | 56 | 5961 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | * | 99.1554 | 99.0274 | 99.2837 | 70.9387 | 16495 | 162 | 16493 | 119 | 70 | 58.8235 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | het | 99.0048 | 98.9955 | 99.0141 | 71.4321 | 10447 | 106 | 10445 | 104 | 55 | 52.8846 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.6397 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | homalt | 99.4382 | 99.0780 | 99.8010 | 69.8334 | 6018 | 56 | 6018 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | * | 98.0795 | 97.8917 | 98.2680 | 78.2094 | 4086 | 88 | 4085 | 72 | 45 | 62.5000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | het | 97.9824 | 98.2413 | 97.7249 | 78.7694 | 2793 | 50 | 2792 | 65 | 38 | 58.4615 | |