PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85001-85050 / 86044 show all | |||||||||||||||
bgallagher-sentieon | SNP | * | map_l250_m0_e0 | * | 97.7220 | 98.4543 | 97.0005 | 93.1217 | 2102 | 33 | 2102 | 65 | 12 | 18.4615 | |
bgallagher-sentieon | SNP | * | map_l250_m0_e0 | het | 97.2742 | 98.3400 | 96.2313 | 93.6672 | 1481 | 25 | 1481 | 58 | 7 | 12.0690 | |
bgallagher-sentieon | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | * | map_l250_m0_e0 | homalt | 98.8067 | 98.7281 | 98.8854 | 91.2693 | 621 | 8 | 621 | 7 | 5 | 71.4286 | |
bgallagher-sentieon | SNP | * | map_l250_m1_e0 | * | 98.3858 | 98.7400 | 98.0341 | 88.9251 | 7131 | 91 | 7131 | 143 | 31 | 21.6783 | |
bgallagher-sentieon | SNP | * | map_l250_m1_e0 | het | 97.9332 | 98.6540 | 97.2228 | 90.1965 | 4691 | 64 | 4691 | 134 | 24 | 17.9104 | |
bgallagher-sentieon | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.8919 | 3 | 1 | 3 | 0 | 0 | ||
bgallagher-sentieon | SNP | * | map_l250_m1_e0 | homalt | 99.2870 | 98.9444 | 99.6321 | 85.1090 | 2437 | 26 | 2437 | 9 | 7 | 77.7778 | |
bgallagher-sentieon | SNP | * | map_l250_m2_e0 | * | 98.4835 | 98.8332 | 98.1363 | 89.4731 | 7793 | 92 | 7793 | 148 | 32 | 21.6216 | |
bgallagher-sentieon | SNP | * | map_l250_m2_e0 | het | 98.0598 | 98.7678 | 97.3619 | 90.6085 | 5130 | 64 | 5130 | 139 | 25 | 17.9856 | |
bgallagher-sentieon | SNP | * | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
bgallagher-sentieon | SNP | * | map_l250_m2_e0 | homalt | 99.3276 | 98.9948 | 99.6627 | 86.1668 | 2659 | 27 | 2659 | 9 | 7 | 77.7778 | |
bgallagher-sentieon | SNP | * | map_l250_m2_e1 | * | 98.4903 | 98.8356 | 98.1475 | 89.5400 | 7894 | 93 | 7894 | 149 | 32 | 21.4765 | |
bgallagher-sentieon | SNP | * | map_l250_m2_e1 | het | 98.0666 | 98.7652 | 97.3778 | 90.6744 | 5199 | 65 | 5199 | 140 | 25 | 17.8571 | |
bgallagher-sentieon | SNP | * | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
bgallagher-sentieon | SNP | * | map_l250_m2_e1 | homalt | 99.3355 | 99.0066 | 99.6667 | 86.2231 | 2691 | 27 | 2691 | 9 | 7 | 77.7778 | |
bgallagher-sentieon | SNP | * | map_siren | * | 99.5992 | 99.6902 | 99.5084 | 55.5562 | 145775 | 453 | 145752 | 720 | 102 | 14.1667 | |
bgallagher-sentieon | SNP | * | map_siren | het | 99.4455 | 99.6483 | 99.2436 | 58.2943 | 90671 | 320 | 90657 | 691 | 77 | 11.1433 | |
bgallagher-sentieon | SNP | * | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
bgallagher-sentieon | SNP | * | map_siren | homalt | 99.8557 | 99.7643 | 99.9473 | 50.0857 | 55026 | 130 | 55017 | 29 | 25 | 86.2069 | |
bgallagher-sentieon | SNP | * | segdup | * | 99.5028 | 99.8432 | 99.1647 | 90.1877 | 28023 | 44 | 28017 | 236 | 12 | 5.0848 | |
bgallagher-sentieon | SNP | * | segdup | het | 99.2648 | 99.8268 | 98.7091 | 91.1291 | 17287 | 30 | 17281 | 226 | 2 | 0.8850 | |
bgallagher-sentieon | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 7 | 0 | 7 | 0 | 0 | ||
bgallagher-sentieon | SNP | * | segdup | homalt | 99.8883 | 99.8697 | 99.9069 | 88.1168 | 10729 | 14 | 10729 | 10 | 10 | 100.0000 | |
bgallagher-sentieon | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 49.3464 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
bgallagher-sentieon | SNP | * | tech_badpromoters | het | 98.0132 | 96.1039 | 100.0000 | 51.6340 | 74 | 3 | 74 | 0 | 0 | ||
bgallagher-sentieon | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
bgallagher-sentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
bgallagher-sentieon | SNP | ti | * | * | 99.9476 | 99.9680 | 99.9272 | 17.4519 | 2084844 | 667 | 2084781 | 1519 | 117 | 7.7024 | |
bgallagher-sentieon | SNP | ti | * | het | 99.9232 | 99.9613 | 99.8851 | 18.4052 | 1281395 | 496 | 1281341 | 1474 | 76 | 5.1560 | |
bgallagher-sentieon | SNP | ti | * | hetalt | 99.7416 | 99.4845 | 100.0000 | 40.0000 | 579 | 3 | 579 | 0 | 0 | ||
bgallagher-sentieon | SNP | ti | * | homalt | 99.9867 | 99.9791 | 99.9944 | 15.8584 | 802870 | 168 | 802861 | 45 | 41 | 91.1111 | |
bgallagher-sentieon | SNP | ti | HG002complexvar | * | 99.9558 | 99.9337 | 99.9780 | 17.4939 | 508099 | 337 | 508035 | 112 | 53 | 47.3214 | |
bgallagher-sentieon | SNP | ti | HG002complexvar | het | 99.9477 | 99.9234 | 99.9720 | 16.9632 | 314525 | 241 | 314471 | 88 | 29 | 32.9545 | |
bgallagher-sentieon | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 35.3312 | 205 | 2 | 205 | 0 | 0 | ||
bgallagher-sentieon | SNP | ti | HG002complexvar | homalt | 99.9695 | 99.9514 | 99.9876 | 18.3190 | 193369 | 94 | 193359 | 24 | 24 | 100.0000 | |
bgallagher-sentieon | SNP | ti | HG002compoundhet | * | 99.8512 | 99.8226 | 99.8798 | 35.5355 | 17447 | 31 | 17445 | 21 | 14 | 66.6667 | |
bgallagher-sentieon | SNP | ti | HG002compoundhet | het | 99.8158 | 99.7685 | 99.8631 | 39.5979 | 9483 | 22 | 9481 | 13 | 6 | 46.1538 | |
bgallagher-sentieon | SNP | ti | HG002compoundhet | hetalt | 99.7403 | 99.4819 | 100.0000 | 21.8453 | 576 | 3 | 576 | 0 | 0 | ||
bgallagher-sentieon | SNP | ti | HG002compoundhet | homalt | 99.9053 | 99.9189 | 99.8918 | 30.4822 | 7388 | 6 | 7388 | 8 | 8 | 100.0000 | |
bgallagher-sentieon | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
bgallagher-sentieon | SNP | ti | func_cds | * | 99.9094 | 99.9565 | 99.8623 | 22.5049 | 13781 | 6 | 13779 | 19 | 0 | 0.0000 | |
bgallagher-sentieon | SNP | ti | func_cds | het | 99.8707 | 99.9647 | 99.7769 | 24.1158 | 8501 | 3 | 8499 | 19 | 0 | 0.0000 |