PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4651-4700 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.5143 | 94.0789 | 99.0790 | 85.3464 | 1287 | 81 | 1291 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 94.3221 | 90.0378 | 99.0345 | 86.8636 | 714 | 79 | 718 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.4207 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.5314 | 100.0000 | 99.0672 | 81.9892 | 531 | 0 | 531 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 96.5074 | 94.0502 | 99.0964 | 85.4242 | 1312 | 83 | 1316 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 94.3102 | 90.0000 | 99.0541 | 86.9442 | 729 | 81 | 733 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.3827 | 43 | 2 | 43 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 82.0606 | 540 | 0 | 540 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 97.5720 | 97.0968 | 98.0519 | 89.3683 | 301 | 9 | 302 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 96.8296 | 95.3125 | 98.3957 | 90.5793 | 183 | 9 | 184 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 96.3571 | 93.9759 | 98.8622 | 86.8583 | 780 | 50 | 782 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 93.9683 | 89.7119 | 98.6486 | 88.3311 | 436 | 50 | 438 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1452 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 83.2146 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 96.2887 | 93.8156 | 98.8957 | 87.9420 | 804 | 53 | 806 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 93.7725 | 89.3360 | 98.6726 | 89.3947 | 444 | 53 | 446 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2862 | 19 | 0 | 19 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 84.4625 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 96.2844 | 93.7931 | 98.9117 | 88.0681 | 816 | 54 | 818 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 93.8042 | 89.3701 | 98.7013 | 89.4569 | 454 | 54 | 456 | 6 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4028 | 19 | 0 | 19 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 84.6970 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8349 | 95.4545 | 98.2558 | 92.5054 | 168 | 8 | 169 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6145 | 92.4528 | 99.0000 | 93.7422 | 98 | 8 | 99 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8530 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.9972 | 95.6522 | 98.3806 | 89.7744 | 484 | 22 | 486 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.3587 | 92.6421 | 98.2394 | 90.9091 | 277 | 22 | 279 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2128 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.7676 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8719 | 95.3757 | 98.4158 | 90.8249 | 495 | 24 | 497 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1641 | 92.2330 | 98.2877 | 91.7561 | 285 | 24 | 287 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.3095 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8450 | 95.2919 | 98.4496 | 90.8802 | 506 | 25 | 508 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.1193 | 92.1136 | 98.3278 | 91.8149 | 292 | 25 | 294 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5157 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 88.3838 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 98.1673 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5507 | 13 | 2 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.7742 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 96.1024 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.0171 | 91.6667 | 96.4912 | 96.8733 | 55 | 5 | 55 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9798 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.0415 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5357 | 94.6903 | 96.3964 | 96.4918 | 107 | 6 | 107 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 93.7500 | 90.9091 | 96.7742 | 97.0878 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |