PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3651-3700 / 86044 show all
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8889
99.7780
100.0000
51.4582
22475224700
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7288
99.5616
99.8965
59.3927
386117386140
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6384
99.4387
99.8390
60.5902
248014248040
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
57.0227
13803138000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.2405
95.8549
98.6667
91.1368
3701637053
60.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.8807
95.6522
98.1413
91.1948
2641226453
60.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
90.9633
106410600
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.0766
96.6507
99.5451
88.1460
26269126261211
91.6667
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.6650
96.0317
99.3548
89.1657
16947016941110
90.9091
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8310
97.7918
99.8926
85.6659
9302193011
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1132
96.6216
99.6516
87.6280
228880228888
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6447
95.8388
99.5199
88.8259
145163145177
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9336
98.0047
99.8804
84.7751
8351783511
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1238
98.4538
99.8029
79.4946
10634167106342112
57.1429
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8422
97.9805
99.7191
81.0931
674413967441910
52.6316
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.6829
30300
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5109
97.3461
99.7039
72.1148
27950762279508324
28.9157
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.6071
1501500
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6662
99.3697
99.9644
66.5145
168681071686866
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.1948
98.5039
99.8954
68.1029
95471459547109
90.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
98.9155
97.9955
99.8529
70.5060
6111125611198
88.8889
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.6953
99.4211
99.9709
62.6075
343520343511
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
97.5610
95.2381
100.0000
97.3009
4024000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
96.1538
92.5926
100.0000
97.7558
2522500
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9016
1501500
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.5088
99.0743
99.9471
55.8025
170181591701596
66.6667
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3053
98.6647
99.9543
56.5280
109361481093352
40.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8767
99.8193
99.9342
54.4187
607711607744
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5556
99.1696
99.9446
40.0259
1803215118029102
20.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.3358
98.7667
99.9115
42.6185
1129214111289102
20.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500