PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3351-3400 / 86044 show all
astatham-gatkSNPtvfunc_cds*
99.8283
99.7483
99.9083
29.1951
436011435940
0.0000
astatham-gatkSNPtvfunc_cdshet
99.7173
99.5860
99.8490
31.6916
264611264540
0.0000
astatham-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
astatham-gatkSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.6351
17040170400
astatham-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1039
98.4828
99.7328
68.8838
149323149341
25.0000
astatham-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6775
97.7823
99.5893
70.8819
9702297041
25.0000
astatham-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.2026
523152300
astatham-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4245
98.9414
99.9124
64.7733
27385293273762414
58.3333
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2005
98.5314
99.8788
66.3539
17310258173012111
52.3810
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.3529
1211200
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8165
99.6633
99.9702
61.6256
10063341006333
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8999
98.0990
99.7140
75.1504
14294277142944113
31.7073
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4610
97.3722
99.5745
76.8854
889324088933810
26.3158
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
86.6071
1501500
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6300
99.3177
99.9443
71.5425
538637538633
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2844
98.6527
99.9242
48.8561
131818131810
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.8777
97.8947
99.8807
50.7349
8371883710
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
45.1539
481048100
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6312
99.4020
99.8614
63.7399
216113216130
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4939
99.2069
99.7825
64.6320
137611137630
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8726
99.7455
100.0000
62.0155
784278400
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5825
99.3750
99.7908
68.8193
14319143130
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4518
99.2341
99.6703
69.5244
907790730
0.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8092
99.6190
100.0000
67.4953
523252300
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.5610
96.9697
98.1595
91.0341
160516031
33.3333
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.1660
96.7742
97.5610
90.7029
120412031
33.3333
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.8699
4014000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9300
96.4838
99.4203
88.6662
137250137287
87.5000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.5501
95.9474
99.2072
89.6154
8763787676
85.7143
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6028
97.4359
99.7980
86.4421
4941349411
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8706
96.2846
99.5098
88.3340
121847121866
100.0000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.4326
95.5919
99.3455
89.4983
7593575955
100.0000