PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
2851-2900 / 86044 show all
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
77.5406
92.6531
66.6667
80.5140
45436278139134
96.4029
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.4680
77.9553
99.6251
31.2943
976276106344
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.5072
98.6072
75.4797
48.5181
3545354115114
99.1304
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7134
99.9043
58.1701
2817981281812715
55.5556
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7775
99.6287
99.9267
58.5881
163686116366121
8.3333
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.2046
97.0093
99.4297
73.5811
5191652333
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9292
99.9646
99.8938
56.3468
112924112921211
91.6667
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
94.7563
95.1613
94.3548
99.9176
118611770
0.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
92.5252
93.1034
91.9540
99.8905
8168070
0.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8842
1601600
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9633
2102100
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.5288
99.4462
99.6115
59.5139
19752110197457749
63.6364
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5583
99.5229
99.5937
62.9090
1105553110304518
40.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8721
97.9866
99.7738
42.6347
262854264666
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7617
99.9506
99.5734
57.9016
6069360692625
96.1538
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
97.6175
97.2128
98.0256
69.1545
25817425325139
76.4706
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
96.9960
97.6240
96.3760
83.1102
945238513222
68.7500
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5860
95.8996
99.3328
33.9394
114649119188
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.6908
99.5935
97.8044
62.3591
4902490119
81.8182
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.6881
99.8364
49.1224
6712216714116
54.5455
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6989
99.5626
99.8355
53.1956
364216364161
16.6667
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6744
99.4583
99.8915
29.8859
918592111
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.5553
21520215244
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200*
96.1232
95.4955
96.7593
64.9351
2121020974
57.1429
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200het
90.5425
92.0000
89.1304
86.3905
4644152
40.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.5410
95.2000
100.0000
29.2398
119612100
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
97.9167
100.0000
95.9184
54.2056
4704722
100.0000
astatham-gatkINDEL*map_l100_m0_e0*
96.7251
96.2892
97.1649
87.6728
1505581508449
20.4545
astatham-gatkINDEL*map_l100_m0_e0het
95.7071
94.9070
96.5209
88.5382
96952971354
11.4286
astatham-gatkINDEL*map_l100_m0_e0hetalt
96.8750
93.9394
100.0000
91.2088
3123200
astatham-gatkINDEL*map_l100_m0_e0homalt
98.7292
99.2141
98.2490
85.0971
505450595
55.5556
astatham-gatkINDEL*map_l100_m1_e0*
96.5907
95.1478
98.0780
85.9214
341217434196717
25.3731
astatham-gatkINDEL*map_l100_m1_e0het
95.1305
93.0201
97.3389
86.8492
207915620855711
19.2982
astatham-gatkINDEL*map_l100_m1_e0hetalt
95.3586
91.1290
100.0000
86.6040
1131111400
astatham-gatkINDEL*map_l100_m1_e0homalt
99.3081
99.4295
99.1870
83.8625
122071220106
60.0000
astatham-gatkINDEL*map_l100_m2_e0*
96.5801
95.1530
98.0507
86.7138
351417935217018
25.7143
astatham-gatkINDEL*map_l100_m2_e0het
95.1270
93.0212
97.3303
87.5556
214616121515912
20.3390
astatham-gatkINDEL*map_l100_m2_e0hetalt
95.3975
91.2000
100.0000
87.4865
1141111600
astatham-gatkINDEL*map_l100_m2_e0homalt
99.2874
99.4449
99.1304
84.8358
125471254116
54.5455
astatham-gatkINDEL*map_l100_m2_e1*
96.5544
95.0745
98.0811
86.7793
357118535787018
25.7143
astatham-gatkINDEL*map_l100_m2_e1het
95.0891
92.9151
97.3672
87.6413
217716621825912
20.3390
astatham-gatkINDEL*map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
87.2518
1201212200
astatham-gatkINDEL*map_l100_m2_e1homalt
99.2985
99.4536
99.1440
84.8877
127471274116
54.5455
astatham-gatkINDEL*map_l125_m0_e0*
96.6572
96.5986
96.7157
90.5095
85230854296
20.6897
astatham-gatkINDEL*map_l125_m0_e0het
95.6440
95.2300
96.0616
91.1381
55928561232
8.6957
astatham-gatkINDEL*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
95.4167
1101100