PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26351-26400 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.9194 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 78.5047 | 69 | 3 | 69 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | * | 99.4253 | 98.8571 | 100.0000 | 92.8894 | 173 | 2 | 173 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.9394 | 82 | 1 | 82 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7132 | 47 | 0 | 47 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | SNP | * | * | * | 99.9456 | 99.9631 | 99.9282 | 19.2565 | 3053492 | 1127 | 3053343 | 2195 | 207 | 9.4305 | |
| dgrover-gatk | SNP | * | * | het | 99.9216 | 99.9564 | 99.8868 | 20.4479 | 1872770 | 817 | 1872645 | 2122 | 144 | 6.7861 | |
| dgrover-gatk | SNP | * | * | hetalt | 99.8275 | 99.6556 | 100.0000 | 41.6667 | 868 | 3 | 868 | 0 | 0 | ||
| dgrover-gatk | SNP | * | * | homalt | 99.9839 | 99.9740 | 99.9938 | 17.2643 | 1179854 | 307 | 1179830 | 73 | 63 | 86.3014 | |
| dgrover-gatk | SNP | * | HG002complexvar | * | 99.9517 | 99.9260 | 99.9773 | 19.0606 | 753823 | 558 | 753668 | 171 | 88 | 51.4620 | |
| dgrover-gatk | SNP | * | HG002complexvar | het | 99.9434 | 99.9156 | 99.9712 | 18.5452 | 465104 | 393 | 464974 | 134 | 53 | 39.5522 | |
| dgrover-gatk | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 36.3636 | 308 | 2 | 308 | 0 | 0 | ||
| dgrover-gatk | SNP | * | HG002complexvar | homalt | 99.9653 | 99.9435 | 99.9872 | 19.8551 | 288411 | 163 | 288386 | 37 | 35 | 94.5946 | |
| dgrover-gatk | SNP | * | HG002compoundhet | * | 99.8063 | 99.8102 | 99.8025 | 41.2435 | 25773 | 49 | 25766 | 51 | 36 | 70.5882 | |
| dgrover-gatk | SNP | * | HG002compoundhet | het | 99.7355 | 99.7390 | 99.7320 | 46.0622 | 14141 | 37 | 14139 | 38 | 24 | 63.1579 | |
| dgrover-gatk | SNP | * | HG002compoundhet | hetalt | 99.8257 | 99.6520 | 100.0000 | 22.7518 | 859 | 3 | 859 | 0 | 0 | ||
| dgrover-gatk | SNP | * | HG002compoundhet | homalt | 99.8980 | 99.9165 | 99.8794 | 34.8304 | 10773 | 9 | 10768 | 13 | 12 | 92.3077 | |
| dgrover-gatk | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | func_cds | * | 99.9284 | 99.9614 | 99.8954 | 24.8199 | 18143 | 7 | 18140 | 19 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | func_cds | het | 99.8970 | 99.9642 | 99.8299 | 26.9739 | 11157 | 4 | 11154 | 19 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | SNP | * | func_cds | homalt | 99.9785 | 99.9570 | 100.0000 | 20.9966 | 6976 | 3 | 6976 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2427 | 99.0344 | 99.4519 | 67.0189 | 4718 | 46 | 4718 | 26 | 9 | 34.6154 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0037 | 98.8395 | 99.1683 | 69.7220 | 2981 | 35 | 2981 | 25 | 8 | 32.0000 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.9526 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6743 | 99.8742 | 99.4753 | 60.5238 | 55561 | 70 | 55550 | 293 | 27 | 9.2150 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5314 | 99.8673 | 99.1977 | 62.4958 | 35372 | 47 | 35361 | 286 | 20 | 6.9930 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.0986 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9282 | 99.8911 | 99.9653 | 56.4446 | 20177 | 22 | 20177 | 7 | 7 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.4424 | 99.5121 | 99.3729 | 70.5814 | 45479 | 223 | 45479 | 287 | 31 | 10.8014 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2336 | 99.4427 | 99.0254 | 72.4471 | 28552 | 160 | 28552 | 281 | 26 | 9.2527 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 15 | 0 | 15 | 0 | 0 | ||