PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26051-26100 / 86044 show all | |||||||||||||||
dgrover-gatk | SNP | ti | map_l125_m2_e1 | * | 99.3781 | 99.3327 | 99.4236 | 73.9461 | 30365 | 204 | 30361 | 176 | 42 | 23.8636 | |
dgrover-gatk | SNP | ti | map_l125_m2_e1 | het | 99.2226 | 99.3137 | 99.1317 | 77.0880 | 18956 | 131 | 18952 | 166 | 34 | 20.4819 | |
dgrover-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.7317 | 24 | 0 | 24 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l125_m2_e1 | homalt | 99.6368 | 99.3629 | 99.9122 | 66.1709 | 11385 | 73 | 11385 | 10 | 8 | 80.0000 | |
dgrover-gatk | SNP | ti | map_l150_m0_e0 | * | 98.8419 | 98.8169 | 98.8670 | 81.9794 | 7768 | 93 | 7766 | 89 | 19 | 21.3483 | |
dgrover-gatk | SNP | ti | map_l150_m0_e0 | het | 98.5705 | 98.7836 | 98.3584 | 84.6267 | 5035 | 62 | 5033 | 84 | 15 | 17.8571 | |
dgrover-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l150_m0_e0 | homalt | 99.3450 | 98.8772 | 99.8172 | 73.4053 | 2730 | 31 | 2730 | 5 | 4 | 80.0000 | |
dgrover-gatk | SNP | ti | map_l150_m1_e0 | * | 99.2284 | 99.1782 | 99.2787 | 76.9359 | 19550 | 162 | 19546 | 142 | 35 | 24.6479 | |
dgrover-gatk | SNP | ti | map_l150_m1_e0 | het | 99.0308 | 99.1431 | 98.9188 | 80.0370 | 12264 | 106 | 12260 | 134 | 29 | 21.6418 | |
dgrover-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 15 | 0 | 15 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.5618 | 99.2357 | 99.8901 | 68.6615 | 7271 | 56 | 7271 | 8 | 6 | 75.0000 | |
dgrover-gatk | SNP | ti | map_l150_m2_e0 | * | 99.2366 | 99.1907 | 99.2825 | 78.2548 | 20346 | 166 | 20342 | 147 | 36 | 24.4898 | |
dgrover-gatk | SNP | ti | map_l150_m2_e0 | het | 99.0461 | 99.1693 | 98.9232 | 81.0415 | 12774 | 107 | 12770 | 139 | 30 | 21.5827 | |
dgrover-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5763 | 15 | 0 | 15 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.5587 | 99.2253 | 99.8942 | 70.9853 | 7557 | 59 | 7557 | 8 | 6 | 75.0000 | |
dgrover-gatk | SNP | ti | map_l150_m2_e1 | * | 99.2396 | 99.1990 | 99.2803 | 78.3146 | 20557 | 166 | 20553 | 149 | 36 | 24.1611 | |
dgrover-gatk | SNP | ti | map_l150_m2_e1 | het | 99.0483 | 99.1779 | 98.9191 | 81.1057 | 12908 | 107 | 12904 | 141 | 30 | 21.2766 | |
dgrover-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5763 | 15 | 0 | 15 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.5631 | 99.2331 | 99.8953 | 71.0135 | 7634 | 59 | 7634 | 8 | 6 | 75.0000 | |
dgrover-gatk | SNP | ti | map_l250_m0_e0 | * | 97.9517 | 97.7372 | 98.1672 | 93.8664 | 1339 | 31 | 1339 | 25 | 6 | 24.0000 | |
dgrover-gatk | SNP | ti | map_l250_m0_e0 | het | 97.5923 | 97.6445 | 97.5401 | 94.6125 | 912 | 22 | 912 | 23 | 5 | 21.7391 | |
dgrover-gatk | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
dgrover-gatk | SNP | ti | map_l250_m0_e0 | homalt | 98.7283 | 97.9358 | 99.5338 | 91.1982 | 427 | 9 | 427 | 2 | 1 | 50.0000 | |
dgrover-gatk | SNP | ti | map_l250_m1_e0 | * | 98.5022 | 98.3839 | 98.6208 | 89.9439 | 4505 | 74 | 4505 | 63 | 18 | 28.5714 | |
dgrover-gatk | SNP | ti | map_l250_m1_e0 | het | 98.2014 | 98.4164 | 97.9873 | 91.3429 | 2921 | 47 | 2921 | 60 | 16 | 26.6667 | |
dgrover-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 4 | 0 | 4 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l250_m1_e0 | homalt | 99.0596 | 98.3199 | 99.8105 | 85.5645 | 1580 | 27 | 1580 | 3 | 2 | 66.6667 | |
dgrover-gatk | SNP | ti | map_l250_m2_e0 | * | 98.6206 | 98.5024 | 98.7390 | 90.3671 | 4933 | 75 | 4933 | 63 | 18 | 28.5714 | |
dgrover-gatk | SNP | ti | map_l250_m2_e0 | het | 98.3591 | 98.5556 | 98.1635 | 91.6192 | 3207 | 47 | 3207 | 60 | 16 | 26.6667 | |
dgrover-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l250_m2_e0 | homalt | 99.1074 | 98.3991 | 99.8260 | 86.5878 | 1721 | 28 | 1721 | 3 | 2 | 66.6667 | |
dgrover-gatk | SNP | ti | map_l250_m2_e1 | * | 98.6193 | 98.5028 | 98.7362 | 90.4249 | 5000 | 76 | 5000 | 64 | 18 | 28.1250 | |
dgrover-gatk | SNP | ti | map_l250_m2_e1 | het | 98.3512 | 98.5450 | 98.1582 | 91.6782 | 3251 | 48 | 3251 | 61 | 16 | 26.2295 | |
dgrover-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.1429 | 5 | 0 | 5 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_l250_m2_e1 | homalt | 99.1191 | 98.4199 | 99.8283 | 86.6233 | 1744 | 28 | 1744 | 3 | 2 | 66.6667 | |
dgrover-gatk | SNP | ti | map_siren | * | 99.6765 | 99.6403 | 99.7128 | 55.1320 | 99994 | 361 | 99979 | 288 | 68 | 23.6111 | |
dgrover-gatk | SNP | ti | map_siren | het | 99.5897 | 99.6105 | 99.5689 | 58.1271 | 62139 | 243 | 62130 | 269 | 51 | 18.9591 | |
dgrover-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.8889 | 56 | 1 | 56 | 0 | 0 | ||
dgrover-gatk | SNP | ti | map_siren | homalt | 99.8204 | 99.6914 | 99.9498 | 49.0891 | 37799 | 117 | 37793 | 19 | 17 | 89.4737 | |
dgrover-gatk | SNP | ti | segdup | * | 99.6780 | 99.8413 | 99.5153 | 89.9275 | 19506 | 31 | 19504 | 95 | 6 | 6.3158 | |
dgrover-gatk | SNP | ti | segdup | het | 99.5358 | 99.8337 | 99.2397 | 90.9955 | 12010 | 20 | 12008 | 92 | 3 | 3.2609 | |
dgrover-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6207 | 2 | 0 | 2 | 0 | 0 | ||
dgrover-gatk | SNP | ti | segdup | homalt | 99.9067 | 99.8534 | 99.9600 | 87.5169 | 7494 | 11 | 7494 | 3 | 3 | 100.0000 | |
dgrover-gatk | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
dgrover-gatk | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
dgrover-gatk | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
dgrover-gatk | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
dgrover-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.5128 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
dgrover-gatk | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 48.1928 | 43 | 1 | 43 | 0 | 0 |