PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25501-25550 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.8990 | 97.6739 | 98.1251 | 62.1451 | 42327 | 1008 | 42130 | 805 | 744 | 92.4224 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3320 | 98.9618 | 97.7101 | 71.4422 | 17634 | 185 | 17239 | 404 | 355 | 87.8713 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8950 | 94.3201 | 99.6144 | 34.3188 | 13235 | 797 | 13433 | 52 | 50 | 96.1538 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3899 | 99.7736 | 97.0441 | 62.0464 | 11458 | 26 | 11458 | 349 | 339 | 97.1347 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.3188 | 98.0964 | 98.5422 | 67.5554 | 64107 | 1244 | 63878 | 945 | 830 | 87.8307 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6759 | 98.9370 | 98.4161 | 73.8431 | 30156 | 324 | 29701 | 478 | 383 | 80.1255 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.1310 | 94.7620 | 99.6215 | 40.8094 | 15830 | 875 | 16056 | 61 | 59 | 96.7213 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7709 | 99.7523 | 97.8086 | 67.6045 | 18121 | 45 | 18121 | 406 | 388 | 95.5665 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5918 | 98.4368 | 98.7473 | 52.7193 | 36020 | 572 | 35944 | 456 | 425 | 93.2018 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9340 | 99.3274 | 98.5437 | 62.8374 | 15654 | 106 | 15496 | 229 | 203 | 88.6463 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.5627 | 95.6563 | 99.5467 | 33.3070 | 10020 | 455 | 10102 | 46 | 45 | 97.8261 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0806 | 99.8938 | 98.2806 | 45.8961 | 10346 | 11 | 10346 | 181 | 177 | 97.7901 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.9977 | 85.1023 | 86.9121 | 57.7994 | 1788 | 313 | 1700 | 256 | 250 | 97.6562 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0811 | 92.6531 | 67.4699 | 80.7692 | 454 | 36 | 280 | 135 | 130 | 96.2963 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.7194 | 78.3546 | 99.6265 | 31.7400 | 981 | 271 | 1067 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.1628 | 98.3287 | 75.1064 | 48.2379 | 353 | 6 | 353 | 117 | 116 | 99.1453 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8478 | 99.8054 | 99.8902 | 58.2232 | 28205 | 55 | 28208 | 31 | 20 | 64.5161 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8508 | 99.7870 | 99.9147 | 58.6642 | 16394 | 35 | 16393 | 14 | 4 | 28.5714 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2046 | 97.0093 | 99.4297 | 73.6076 | 519 | 16 | 523 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9646 | 99.8762 | 56.3643 | 11292 | 4 | 11292 | 14 | 13 | 92.8571 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8985 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8863 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9620 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5315 | 99.4915 | 99.5716 | 59.7014 | 19761 | 101 | 19754 | 85 | 47 | 55.2941 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5450 | 99.5769 | 99.5131 | 63.1488 | 11061 | 47 | 11036 | 54 | 17 | 31.4815 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.9101 | 98.0611 | 99.7739 | 42.7400 | 2630 | 52 | 2648 | 6 | 6 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7781 | 99.9671 | 99.5898 | 57.9684 | 6070 | 2 | 6070 | 25 | 24 | 96.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.4823 | 96.9868 | 97.9829 | 69.3497 | 2575 | 80 | 2526 | 52 | 40 | 76.9231 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7853 | 97.1074 | 96.4652 | 83.3460 | 940 | 28 | 846 | 31 | 21 | 67.7419 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.5024 | 95.8159 | 99.2494 | 33.8300 | 1145 | 50 | 1190 | 9 | 8 | 88.8889 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5915 | 99.5935 | 97.6096 | 62.3406 | 490 | 2 | 490 | 12 | 11 | 91.6667 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7994 | 99.7475 | 99.8514 | 49.4629 | 6716 | 17 | 6718 | 10 | 6 | 60.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7674 | 99.6720 | 99.8630 | 53.6272 | 3646 | 12 | 3645 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6744 | 99.4583 | 99.8915 | 30.2044 | 918 | 5 | 921 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 100.0000 | 99.8145 | 47.6826 | 2152 | 0 | 2152 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.9027 | 95.4955 | 96.3134 | 65.1685 | 212 | 10 | 209 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.4706 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 30.0578 | 119 | 6 | 121 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 54.5455 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | * | 97.7081 | 98.0806 | 97.3384 | 87.7968 | 1533 | 30 | 1536 | 42 | 9 | 21.4286 | |