PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 495 496 497 498 499 500 501 502 503 ... 1720 1721 » 24901-24950 / 86044 show all
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	93.7500	2	0	2	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6889	99.4208	99.9584	73.0221	2403	14	2403	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9263	98.3656	99.4933	72.9052	30634	509	30634	156	20	12.8205
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.9555	98.7078	99.2044	76.2044	19326	253	19326	155	19	12.2581
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	92.7273	12	0	12	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8752	97.7839	99.9911	64.2557	11296	256	11296	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7826	99.6279	99.9378	69.6768	4819	18	4819	3	3	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7614	99.6188	99.9044	71.9607	3136	12	3136	3	3	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.0000	1	0	1	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8220	99.6445	100.0000	64.1135	1682	6	1682	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	*	96.7742	93.7500	100.0000	97.8754	15	1	15	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	het	94.7368	90.0000	100.0000	98.3051	9	1	9	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	100.0000	100.0000	100.0000	96.5517	6	0	6	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5515	99.1544	99.9518	47.1169	6215	53	6215	3	3	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6545	99.3358	99.9752	49.3288	4038	27	4038	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	80.0000	2	0	2	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.3604	98.8187	99.9081	42.3617	2175	26	2175	2	2	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3478	99.3571	99.3386	42.1628	10663	69	10663	71	1	1.4085
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2237	99.4958	98.9530	45.8387	6710	34	6710	71	1	1.4085
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	85.7143	1	0	1	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5591	99.1221	100.0000	34.4828	3952	35	3952	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	93.3333	90.0990	96.8085	93.6314	91	10	91	3	3	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	93.8462	92.4242	95.3125	93.8402	61	5	61	3	3	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	92.3077	85.7143	100.0000	93.1350	30	5	30	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.4469	98.9759	99.9224	33.5509	3866	40	3865	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.5138	99.1122	99.9186	36.8380	2456	22	2455	2	1	50.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3658	98.8087	99.9291	26.8533	1410	17	1410	1	1	100.0000
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	94.4828	8	0	8	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	92.4051	6	0	6	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.9697	2	0	2	0	0
ckim-vqsr	SNP	ti	map_l100_m0_e0	*	70.6665	54.9125	99.0964	86.5903	11955	9816	11954	109	1	0.9174
ckim-vqsr	SNP	ti	map_l100_m0_e0	het	80.8690	68.4116	98.8733	87.2610	9566	4417	9565	109	1	0.9174
ckim-vqsr	SNP	ti	map_l100_m0_e0	hetalt	25.0000	14.2857	100.0000	97.2973	2	12	2	0	0
ckim-vqsr	SNP	ti	map_l100_m0_e0	homalt	46.9836	30.7049	100.0000	82.8803	2387	5387	2387	0	0
ckim-vqsr	SNP	ti	map_l100_m1_e0	*	77.5493	63.5768	99.3932	81.5266	30473	17458	30468	186	13	6.9893
ckim-vqsr	SNP	ti	map_l100_m1_e0	het	85.6453	75.3523	99.1953	82.9534	22562	7380	22557	183	10	5.4645
ckim-vqsr	SNP	ti	map_l100_m1_e0	hetalt	51.2821	34.4828	100.0000	93.5065	10	19	10	0	0
ckim-vqsr	SNP	ti	map_l100_m1_e0	homalt	61.0965	43.9922	99.9620	75.5921	7901	10059	7901	3	3	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge