PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24801-24850 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m0_e0 | homalt | 35.9844 | 21.9396 | 100.0000 | 98.1124 | 138 | 491 | 138 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l250_m1_e0 | * | 57.9563 | 41.1520 | 97.9565 | 97.0469 | 2972 | 4250 | 2972 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | het | 68.0455 | 52.2397 | 97.5648 | 97.0733 | 2484 | 2271 | 2484 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m1_e0 | homalt | 33.0735 | 19.8132 | 100.0000 | 96.8810 | 488 | 1975 | 488 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l250_m2_e0 | * | 59.1976 | 42.3843 | 98.1210 | 97.1166 | 3342 | 4543 | 3342 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | het | 69.2853 | 53.6581 | 97.7552 | 97.1324 | 2787 | 2407 | 2787 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m2_e0 | homalt | 34.2487 | 20.6627 | 100.0000 | 97.0120 | 555 | 2131 | 555 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l250_m2_e1 | * | 59.3854 | 42.5817 | 98.0963 | 97.1254 | 3401 | 4586 | 3401 | 66 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e1 | het | 69.4427 | 53.8564 | 97.7249 | 97.1454 | 2835 | 2429 | 2835 | 66 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m2_e1 | homalt | 34.4702 | 20.8241 | 100.0000 | 96.9977 | 566 | 2152 | 566 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_siren | * | 85.1088 | 74.3093 | 99.5811 | 71.1680 | 108661 | 37567 | 108641 | 457 | 31 | 6.7834 | |
| ckim-vqsr | SNP | * | map_siren | het | 90.3081 | 82.7379 | 99.4031 | 73.7019 | 75284 | 15707 | 75273 | 452 | 26 | 5.7522 | |
| ckim-vqsr | SNP | * | map_siren | hetalt | 70.8661 | 55.5556 | 97.8261 | 87.6676 | 45 | 36 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | map_siren | homalt | 75.3334 | 60.4322 | 99.9880 | 62.9988 | 33332 | 21824 | 33323 | 4 | 4 | 100.0000 | |
| ckim-vqsr | SNP | * | segdup | * | 98.8099 | 98.0689 | 99.5622 | 93.7251 | 27525 | 542 | 27519 | 121 | 12 | 9.9174 | |
| ckim-vqsr | SNP | * | segdup | het | 98.9505 | 98.5621 | 99.3421 | 95.0542 | 17068 | 249 | 17062 | 113 | 4 | 3.5398 | |
| ckim-vqsr | SNP | * | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.6239 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | SNP | * | segdup | homalt | 98.5850 | 97.2820 | 99.9235 | 88.7282 | 10451 | 292 | 10451 | 8 | 8 | 100.0000 | |
| ckim-vqsr | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.0196 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 50.9804 | 75 | 2 | 75 | 0 | 0 | ||
| ckim-vqsr | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | ti | * | * | 99.3455 | 98.7474 | 99.9510 | 21.8102 | 2059387 | 26124 | 2059330 | 1009 | 89 | 8.8206 | |
| ckim-vqsr | SNP | ti | * | het | 99.5238 | 99.1280 | 99.9229 | 24.8520 | 1270713 | 11178 | 1270665 | 981 | 62 | 6.3201 | |
| ckim-vqsr | SNP | ti | * | hetalt | 97.3638 | 95.1890 | 99.6403 | 53.2773 | 554 | 28 | 554 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | ti | * | homalt | 99.0608 | 98.1423 | 99.9967 | 16.3042 | 788120 | 14918 | 788111 | 26 | 25 | 96.1538 | |
| ckim-vqsr | SNP | ti | HG002complexvar | * | 98.8535 | 97.7474 | 99.9849 | 18.1351 | 496983 | 11453 | 496925 | 75 | 38 | 50.6667 | |
| ckim-vqsr | SNP | ti | HG002complexvar | het | 99.1493 | 98.3302 | 99.9822 | 17.7224 | 309510 | 5256 | 309462 | 55 | 18 | 32.7273 | |
| ckim-vqsr | SNP | ti | HG002complexvar | hetalt | 96.2406 | 92.7536 | 100.0000 | 40.3727 | 192 | 15 | 192 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | HG002complexvar | homalt | 98.3712 | 96.8046 | 99.9893 | 18.7775 | 187281 | 6182 | 187271 | 20 | 20 | 100.0000 | |
| ckim-vqsr | SNP | ti | HG002compoundhet | * | 98.9109 | 97.9517 | 99.8891 | 36.4634 | 17120 | 358 | 17120 | 19 | 17 | 89.4737 | |
| ckim-vqsr | SNP | ti | HG002compoundhet | het | 99.2006 | 98.5692 | 99.8402 | 40.6564 | 9369 | 136 | 9369 | 15 | 13 | 86.6667 | |
| ckim-vqsr | SNP | ti | HG002compoundhet | hetalt | 97.5221 | 95.1641 | 100.0000 | 22.7209 | 551 | 28 | 551 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | HG002compoundhet | homalt | 98.6436 | 97.3763 | 99.9445 | 31.0556 | 7200 | 194 | 7200 | 4 | 4 | 100.0000 | |
| ckim-vqsr | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | func_cds | * | 99.7642 | 99.7244 | 99.8040 | 29.1716 | 13749 | 38 | 13747 | 27 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | func_cds | het | 99.7473 | 99.8119 | 99.6828 | 33.7510 | 8488 | 16 | 8486 | 27 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | func_cds | homalt | 99.7910 | 99.5829 | 100.0000 | 20.1550 | 5253 | 22 | 5253 | 0 | 0 | ||