PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24751-24800 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | * | map_l100_m0_e0 | * | 70.1414 | 54.3558 | 98.8482 | 87.4638 | 17851 | 14990 | 17850 | 208 | 2 | 0.9615 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | het | 80.5244 | 68.0594 | 98.5791 | 88.0545 | 14432 | 6773 | 14431 | 208 | 2 | 0.9615 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m0_e0 | homalt | 45.4479 | 29.4062 | 100.0000 | 84.0267 | 3417 | 8203 | 3417 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | * | 76.6064 | 62.3814 | 99.2353 | 82.7403 | 45166 | 27237 | 45158 | 348 | 14 | 4.0230 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | het | 85.1033 | 74.6313 | 98.9938 | 84.0158 | 33852 | 11507 | 33844 | 344 | 11 | 3.1977 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | homalt | 59.0007 | 41.8509 | 99.9646 | 77.1745 | 11301 | 15702 | 11301 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | * | 77.0107 | 62.9198 | 99.2344 | 83.7056 | 46538 | 27426 | 46530 | 359 | 16 | 4.4568 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | het | 85.3365 | 74.9930 | 98.9898 | 84.8848 | 34796 | 11603 | 34788 | 355 | 13 | 3.6620 | |
| ckim-vqsr | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.9640 | 14 | 28 | 14 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m2_e0 | homalt | 59.7529 | 42.6116 | 99.9659 | 78.6625 | 11728 | 15795 | 11728 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | * | 77.1389 | 63.0879 | 99.2421 | 83.6761 | 47150 | 27587 | 47142 | 360 | 16 | 4.4444 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | het | 85.4225 | 75.1205 | 98.9994 | 84.8723 | 35230 | 11668 | 35222 | 356 | 13 | 3.6517 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 94.6237 | 15 | 28 | 15 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m2_e1 | homalt | 59.9673 | 42.8299 | 99.9664 | 78.5551 | 11905 | 15891 | 11905 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | * | 64.0727 | 47.4439 | 98.6485 | 91.7531 | 9197 | 10188 | 9197 | 126 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | het | 75.2621 | 60.9365 | 98.3935 | 91.9254 | 7717 | 4947 | 7717 | 126 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l125_m0_e0 | homalt | 36.1328 | 22.0501 | 100.0000 | 90.6459 | 1480 | 5232 | 1480 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l125_m1_e0 | * | 69.8181 | 53.9590 | 98.8800 | 88.0425 | 24458 | 20869 | 24455 | 277 | 5 | 1.8051 | |
| ckim-vqsr | SNP | * | map_l125_m1_e0 | het | 80.8165 | 68.4629 | 98.6098 | 88.4760 | 19438 | 8954 | 19435 | 274 | 3 | 1.0949 | |
| ckim-vqsr | SNP | * | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 96.4467 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l125_m1_e0 | homalt | 45.7370 | 29.6539 | 99.9402 | 85.9137 | 5013 | 11892 | 5013 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | * | 70.4819 | 54.7482 | 98.9056 | 88.7400 | 25580 | 21143 | 25577 | 283 | 6 | 2.1201 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | het | 81.2064 | 69.0122 | 98.6348 | 89.1411 | 20233 | 9085 | 20230 | 280 | 4 | 1.4286 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 97.1074 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l125_m2_e0 | homalt | 47.0112 | 30.7338 | 99.9439 | 86.8214 | 5340 | 12035 | 5340 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | * | 70.6297 | 54.9235 | 98.9163 | 88.7326 | 25925 | 21277 | 25922 | 284 | 6 | 2.1127 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | het | 81.3082 | 69.1532 | 98.6474 | 89.1453 | 20497 | 9143 | 20494 | 281 | 4 | 1.4235 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 97.1074 | 7 | 23 | 7 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l125_m2_e1 | homalt | 47.2295 | 30.9206 | 99.9447 | 86.7543 | 5421 | 12111 | 5421 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | * | 60.5419 | 43.7334 | 98.3368 | 94.2598 | 5262 | 6770 | 5262 | 89 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | het | 71.5668 | 56.3476 | 98.0495 | 94.3303 | 4474 | 3466 | 4474 | 89 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l150_m0_e0 | homalt | 32.3149 | 19.2712 | 100.0000 | 93.7742 | 788 | 3301 | 788 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l150_m1_e0 | * | 65.6433 | 49.1783 | 98.6821 | 91.1099 | 15053 | 15556 | 15050 | 201 | 2 | 0.9950 | |
| ckim-vqsr | SNP | * | map_l150_m1_e0 | het | 77.5773 | 64.0246 | 98.4082 | 91.2212 | 12367 | 6949 | 12364 | 200 | 1 | 0.5000 | |
| ckim-vqsr | SNP | * | map_l150_m1_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.6608 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l150_m1_e0 | homalt | 38.4351 | 23.7914 | 99.9627 | 90.5070 | 2682 | 8591 | 2682 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l150_m2_e0 | * | 66.5265 | 50.1758 | 98.6845 | 91.5836 | 15982 | 15870 | 15979 | 213 | 3 | 1.4085 | |
| ckim-vqsr | SNP | * | map_l150_m2_e0 | het | 78.1444 | 64.8041 | 98.4007 | 91.6936 | 13047 | 7086 | 13044 | 212 | 2 | 0.9434 | |
| ckim-vqsr | SNP | * | map_l150_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l150_m2_e0 | homalt | 40.0656 | 25.0534 | 99.9659 | 91.0042 | 2931 | 8768 | 2931 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l150_m2_e1 | * | 66.6447 | 50.3105 | 98.6844 | 91.5888 | 16205 | 16005 | 16202 | 216 | 3 | 1.3889 | |
| ckim-vqsr | SNP | * | map_l150_m2_e1 | het | 78.2150 | 64.9020 | 98.3989 | 91.7124 | 13216 | 7147 | 13213 | 215 | 2 | 0.9302 | |
| ckim-vqsr | SNP | * | map_l150_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.0583 | 4 | 16 | 4 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l150_m2_e1 | homalt | 40.3024 | 25.2389 | 99.9665 | 90.9405 | 2985 | 8842 | 2985 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | * | 54.9244 | 38.2670 | 97.2619 | 98.4570 | 817 | 1318 | 817 | 23 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | het | 61.5036 | 45.0863 | 96.7236 | 98.5089 | 679 | 827 | 679 | 23 | 0 | 0.0000 | |