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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 487 488 489 490 491 492 493 494 495 ... 1720 1721 » 24501-24550 / 86044 show all
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3666	99.2095	99.5242	88.1418	1255	10	1255	6	6	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3069	99.2443	99.3695	89.2982	788	6	788	5	5	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.4602	465	4	465	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4081	99.2523	99.5645	82.9173	4115	31	4115	18	8	44.4444
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2430	99.1304	99.3558	84.2935	2622	23	2622	17	7	41.1765
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	94.1176	3	0	3	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6989	99.4660	99.9329	79.6894	1490	8	1490	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9598	98.5931	99.3293	80.6409	14366	205	14366	97	14	14.4330
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8377	98.6970	98.9788	83.4427	9014	119	9014	93	10	10.7527
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	94.2529	15	0	15	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6806	99.6087	99.7525	66.7490	4837	19	4837	12	10	83.3333
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6600	99.6762	99.6439	69.2790	3078	10	3078	11	9	81.8182
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.8333	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7164	99.4907	99.9431	60.9458	1758	9	1758	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	93.8776	88.4615	100.0000	97.0361	23	3	23	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	het	90.3226	82.3529	100.0000	97.5779	14	3	14	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	homalt	100.0000	100.0000	100.0000	95.4082	9	0	9	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5445	99.1568	99.9353	61.6132	10819	92	10815	7	5	71.4286
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6571	99.3874	99.9283	62.5798	6976	43	6972	5	3	60.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	72.2222	5	0	5	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.3400	98.7394	99.9479	59.7020	3838	49	3838	2	2	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6992	99.3022	98.1034	41.3093	7400	52	7397	143	1	0.6993
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2513	99.5095	97.0246	43.7566	4666	23	4663	143	1	0.6993
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	66.6667	5	0	5	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4715	98.9485	100.0000	36.3424	2729	29	2729	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	96.3855	95.2381	97.5610	89.5939	40	2	40	1	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	95.7746	94.4444	97.1429	88.4488	34	2	34	1	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	homalt	100.0000	100.0000	100.0000	93.4066	6	0	6	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7534	99.6812	99.8257	39.7409	3439	11	3436	6	2	33.3333
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.8363	99.9532	99.7196	42.4576	2137	1	2134	6	2	33.3333
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6556	99.3135	100.0000	34.6057	1302	9	1302	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	98.5714	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	98.2456	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	map_l100_m0_e0	*	69.0592	53.2118	98.3492	88.9281	5898	5186	5898	99	1	1.0101
ckim-vqsr	SNP	tv	map_l100_m0_e0	het	79.8556	67.3775	98.0060	89.3473	4866	2356	4866	99	1	1.0101

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