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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 486 487 488 489 490 491 492 493 494 ... 1720 1721 » 24451-24500 / 86044 show all
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.4920	97.0234	97.9652	58.1135	17145	526	17140	356	338	94.9438
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.8690	98.8710	96.8872	72.0428	5780	66	5727	184	169	91.8478
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8550	94.3417	99.5058	29.2966	7603	456	7651	38	38	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.1989	99.8938	96.5606	60.0492	3762	4	3762	134	131	97.7612
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.7733	97.4942	98.0540	45.3637	9221	237	9221	183	179	97.8142
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	97.8789	99.1218	96.6667	63.6387	2709	24	2697	93	90	96.7742
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4580	95.5784	99.4130	24.4663	4561	211	4573	27	27	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3615	99.8976	96.8719	41.6063	1951	2	1951	63	62	98.4127
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	85.4801	83.0652	88.0396	45.1406	981	200	979	133	132	99.2481
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	72.7050	91.2162	60.4396	74.6165	135	13	110	72	71	98.6111
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.2176	687	185	710	2	2	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.9050	98.7578	72.9358	36.8116	159	2	159	59	59	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	100.0000	100.0000	100.0000	85.2381	155	0	155	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.8904	94.5946	97.2222	60.8696	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	82.3810	74	0	74	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	93.8053	92.9825	94.6429	99.4757	53	4	53	3	0	0.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	91.5663	90.4762	92.6829	99.3618	38	4	38	3	0	0.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.1788	9	0	9	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	100.0000	100.0000	100.0000	99.8102	6	0	6	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2927	98.9965	99.5907	51.8966	3650	37	3650	15	12	80.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4854	99.3353	99.6359	61.3327	1644	11	1642	6	3	50.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6785	97.8849	99.4850	27.6398	1157	25	1159	6	6	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	97.5092	96.8061	98.2226	52.3389	1273	42	1271	23	16	69.5652
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	97.3783	98.4848	96.2963	75.6574	325	5	312	12	6	50.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2401	95.3342	99.2238	23.4653	756	37	767	6	6	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.7147	100.0000	97.4619	47.3262	192	0	192	5	4	80.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7241	99.7700	99.6783	64.5024	2169	5	2169	7	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6400	99.7837	99.4968	65.7726	1384	3	1384	7	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	80.0000	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	61.9602	784	2	784	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6878	99.7917	99.5842	69.2913	1437	3	1437	6	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6181	99.8906	99.3471	70.2781	913	1	913	6	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	75.0000	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.3737	523	2	523	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	96.9512	96.3636	97.5460	90.9595	159	6	159	4	2	50.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.3563	95.9677	96.7480	90.6535	119	5	119	4	2	50.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	98.7654	97.5610	100.0000	91.7355	40	1	40	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.1899	99.0155	99.3649	88.4872	1408	14	1408	9	8	88.8889
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.0685	99.0142	99.1228	89.4371	904	9	904	8	7	87.5000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.9091	2	0	2	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.2267	502	5	502	1	1	100.0000

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