PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
24351-24400 / 86044 show all
ckim-vqsrINDELD1_5map_l250_m1_e0*
92.0000
94.1520
89.9441
96.9501
16110161181
5.5556
ckim-vqsrINDELD1_5map_l250_m1_e0het
89.2704
93.6937
85.2459
97.3920
1047104181
5.5556
ckim-vqsrINDELD1_5map_l250_m1_e0hetalt
50.0000
33.3333
100.0000
99.2647
12100
ckim-vqsrINDELD1_5map_l250_m1_e0homalt
99.1150
98.2456
100.0000
94.6919
5615600
ckim-vqsrINDELD1_5map_l250_m2_e0*
92.5532
94.5652
90.6250
97.1080
17410174181
5.5556
ckim-vqsrINDELD1_5map_l250_m2_e0het
90.1186
94.2149
86.3636
97.4995
1147114181
5.5556
ckim-vqsrINDELD1_5map_l250_m2_e0hetalt
50.0000
33.3333
100.0000
99.3902
12100
ckim-vqsrINDELD1_5map_l250_m2_e0homalt
99.1597
98.3333
100.0000
95.0669
5915900
ckim-vqsrINDELD1_5map_l250_m2_e1*
92.5926
94.5946
90.6736
97.1634
17510175181
5.5556
ckim-vqsrINDELD1_5map_l250_m2_e1het
90.1961
94.2623
86.4662
97.5411
1157115181
5.5556
ckim-vqsrINDELD1_5map_l250_m2_e1hetalt
50.0000
33.3333
100.0000
99.4048
12100
ckim-vqsrINDELD1_5map_l250_m2_e1homalt
99.1597
98.3333
100.0000
95.1915
5915900
ckim-vqsrINDELD1_5map_siren*
98.3083
97.9031
98.7169
84.9543
3455743462456
13.3333
ckim-vqsrINDELD1_5map_sirenhet
97.8636
97.4967
98.2332
85.9953
2220572224402
5.0000
ckim-vqsrINDELD1_5map_sirenhetalt
93.6709
88.0952
100.0000
91.2218
74107400
ckim-vqsrINDELD1_5map_sirenhomalt
99.4864
99.4007
99.5723
81.4444
11617116454
80.0000
ckim-vqsrINDELD1_5segdup*
99.1399
99.1840
99.0958
96.1257
109491096102
20.0000
ckim-vqsrINDELD1_5segduphet
98.9178
98.9884
98.8473
96.6564
685768680
0.0000
ckim-vqsrINDELD1_5segduphetalt
98.0392
96.1538
100.0000
95.6336
5025100
ckim-vqsrINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5493
359035922
100.0000
ckim-vqsrINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9960
10100
ckim-vqsrINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9946
10100
ckim-vqsrINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
ckim-vqsrINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
ckim-vqsrINDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
48.5714
1811800
ckim-vqsrINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
58.8235
71700
ckim-vqsrINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-vqsrINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
ckim-vqsrINDELD6_15**
98.2389
97.9189
98.5610
55.8987
2554954325548373340
91.1528
ckim-vqsrINDELD6_15*het
98.8252
99.3703
98.2861
64.1967
115197311469200170
85.0000
ckim-vqsrINDELD6_15*hetalt
96.8555
94.3479
99.5000
32.9551
771246277613939
100.0000
ckim-vqsrINDELD6_15*homalt
98.8887
99.8735
97.9231
55.6564
631886318134131
97.7612
ckim-vqsrINDELD6_15HG002complexvar*
98.0282
97.5292
98.5322
58.5722
517113151697770
90.9091
ckim-vqsrINDELD6_15HG002complexvarhet
98.8682
98.6538
99.0835
59.5418
30784230272822
78.5714
ckim-vqsrINDELD6_15HG002complexvarhetalt
93.7593
91.3129
96.3403
47.3985
925889743737
100.0000
ckim-vqsrINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
ckim-vqsrINDELD6_15HG002compoundhet*
95.5291
94.7736
96.2967
36.1965
85594728555329326
99.0881
ckim-vqsrINDELD6_15HG002compoundhethet
89.9917
98.0140
83.1832
68.8202
83917831168166
98.8095
ckim-vqsrINDELD6_15HG002compoundhethetalt
96.9271
94.4179
99.5733
24.1268
769645577003333
100.0000
ckim-vqsrINDELD6_15HG002compoundhethomalt
27.2727
100.0000
15.7895
71.2121
24024128127
99.2188
ckim-vqsrINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9554
10100
ckim-vqsrINDELD6_15decoyhet
0.0000
100.0000
00000
ckim-vqsrINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2647
10100
ckim-vqsrINDELD6_15decoyhomalt
0.0000
100.0000
00000
ckim-vqsrINDELD6_15func_cds*
100.0000
100.0000
100.0000
56.5657
4304300
ckim-vqsrINDELD6_15func_cdshet
100.0000
100.0000
100.0000
53.9683
2902900
ckim-vqsrINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-vqsrINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
ckim-vqsrINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.7823
92.5681
95.0288
54.7425
36372923632190179
94.2105
ckim-vqsrINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.1494
96.8783
89.6970
74.8348
9313088810292
90.1961