PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
24101-24150 / 86044 show all
ckim-vqsrINDELI16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUStech_badpromoters*
100.0000
100.0000
100.0000
73.3333
40400
ckim-vqsrINDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
75.0000
20200
ckim-vqsrINDELI16_PLUStech_badpromotershetalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
ckim-vqsrINDELI1_5**
99.3579
99.0515
99.6662
59.3791
1492351429149282500397
79.4000
ckim-vqsrINDELI1_5*het
99.5998
99.5116
99.6881
61.9903
7865538678634246145
58.9431
ckim-vqsrINDELI1_5*hetalt
95.5907
91.5945
99.9516
60.1444
102549411031655
100.0000
ckim-vqsrINDELI1_5*homalt
99.7099
99.8312
99.5890
55.2277
6032610260332249247
99.1968
ckim-vqsrINDELI1_5HG002complexvar*
99.3737
98.9030
99.8489
56.8918
32997366330425041
82.0000
ckim-vqsrINDELI1_5HG002complexvarhet
99.6583
99.4392
99.8784
58.1585
18087102180642213
59.0909
ckim-vqsrINDELI1_5HG002complexvarhetalt
92.1493
85.6315
99.7409
68.7323
1478248154044
100.0000
ckim-vqsrINDELI1_5HG002complexvarhomalt
99.8514
99.8810
99.8217
52.9334
1343216134382424
100.0000
ckim-vqsrINDELI1_5HG002compoundhet*
94.7676
92.2629
97.4120
66.1892
1140095611405303301
99.3399
ckim-vqsrINDELI1_5HG002compoundhethet
94.8823
98.1176
91.8536
86.7262
834167786967
97.1014
ckim-vqsrINDELI1_5HG002compoundhethetalt
95.5975
91.5988
99.9612
55.8418
102389391029944
100.0000
ckim-vqsrINDELI1_5HG002compoundhethomalt
73.9572
99.6960
58.7814
88.6470
3281328230230
100.0000
ckim-vqsrINDELI1_5decoy*
0.0000
100.0000
00000
ckim-vqsrINDELI1_5decoyhet
0.0000
100.0000
00000
ckim-vqsrINDELI1_5decoyhetalt
0.0000
100.0000
00000
ckim-vqsrINDELI1_5decoyhomalt
0.0000
100.0000
00000
ckim-vqsrINDELI1_5func_cds*
99.4505
100.0000
98.9071
47.8632
180018120
0.0000
ckim-vqsrINDELI1_5func_cdshet
98.3607
100.0000
96.7742
64.7727
5906020
0.0000
ckim-vqsrINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-vqsrINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
31.2139
119011900
ckim-vqsrINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1514
90.4452
98.1743
66.8941
166617616673127
87.0968
ckim-vqsrINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.0443
95.9215
98.1938
78.8174
63527598117
63.6364
ckim-vqsrINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.2201
83.9465
99.8737
37.5887
75314479111
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.8621
98.2332
93.6027
69.8477
27852781919
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8670
10100
ckim-vqsrINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1538
10100
ckim-vqsrINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2521
96.8864
99.6568
72.9143
15092485151005245
86.5385
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4572
99.2298
99.6856
78.8294
60554760251912
63.1579
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1910
92.7080
99.9459
61.2682
5505433554333
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5070
99.8586
99.1578
72.7530
3532535323030
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0024
96.5790
99.4683
68.2096
15527550155288369
83.1325
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0199
98.6449
99.3978
76.9388
63338762723824
63.1579
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0580
99.2555
98.8612
71.4717
37332837334343
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.5020
96.0317
99.0180
65.9610
6052560565
83.3333
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.2405
96.8208
99.7024
70.0000
3351133510
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
91.6129
84.5238
100.0000
53.8961
71137100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.5149
99.5000
97.5490
60.8445
199119955
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8621
10100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
10100
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000