PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
23801-23850 / 86044 show all
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.7656
99.2084
88.8889
61.0497
37633764746
97.8723
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.9167
10100
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.9697
10100
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9357
97.2033
98.6791
48.0009
2002057620021268262
97.7612
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.8419
99.1062
98.5790
59.3072
7318667284105100
95.2381
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6223
93.7986
99.6213
24.3454
759350276282929
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6293
99.8437
97.4442
51.1779
510985109134133
99.2537
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.3869
97.8750
98.9043
46.8420
1787138817872198194
97.9798
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0969
99.4760
98.7206
57.2310
66443566368683
96.5116
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2095
94.9026
99.6314
23.5322
647934864882424
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0301
99.8948
98.1803
50.4508
4748547488887
98.8636
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0288
97.3348
98.7327
54.0492
2165759321658278267
96.0432
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8983
99.1544
98.6435
64.3687
8325718290114105
92.1053
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5969
93.7477
99.6247
26.3674
766251176982929
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7289
99.8064
97.6744
57.4974
5670115670135133
98.5185
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3646
97.7617
98.9750
61.5381
3070570330705318294
92.4528
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0685
99.1132
99.0238
69.1438
1363512213593134112
83.5821
ckim-vqsrINDELC16_PLUSsegduphetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSsegduphomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSsegdupwithalt*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSsegdupwithalthet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSsegdupwithalthomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUStech_badpromoters*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUStech_badpromotershet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5**
0.0000
90.0000
0.0000
0.0000
91000
ckim-vqsrINDELC1_5*het
0.0000
88.8889
0.0000
0.0000
81000
ckim-vqsrINDELC1_5*hetalt
0.0000
100.0000
0.0000
0.0000
10000
ckim-vqsrINDELC1_5*homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5HG002complexvar*
0.0000
85.7143
0.0000
0.0000
61000
ckim-vqsrINDELC1_5HG002complexvarhet
0.0000
85.7143
0.0000
0.0000
61000
ckim-vqsrINDELC1_5HG002complexvarhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5HG002complexvarhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5HG002compoundhet*
0.0000
100.0000
0.0000
0.0000
10000
ckim-vqsrINDELC1_5HG002compoundhethet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5HG002compoundhethetalt
0.0000
100.0000
0.0000
0.0000
10000
ckim-vqsrINDELC1_5HG002compoundhethomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5decoy*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5decoyhet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5decoyhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5decoyhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5func_cds*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5func_cdshet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000