PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
23751-23800 / 86044 show all
ckim-vqsrINDELD1_5HG002complexvarhet
99.6767
99.4799
99.8743
56.3731
20657108206612612
46.1538
ckim-vqsrINDELD1_5HG002complexvarhetalt
92.5788
88.8314
96.6563
72.4212
120115112434343
100.0000
ckim-vqsrINDELD1_5HG002complexvarhomalt
99.8538
99.8585
99.8491
60.1802
1058315105901614
87.5000
ckim-vqsrINDELD1_5HG002compoundhet*
95.9661
94.4994
97.4791
66.2791
1156267311562299296
98.9967
ckim-vqsrINDELD1_5HG002compoundhethet
96.1223
98.2639
94.0720
78.9357
1698301698107105
98.1308
ckim-vqsrINDELD1_5HG002compoundhethetalt
96.5656
93.7157
99.5943
58.2787
957464295743939
100.0000
ckim-vqsrINDELD1_5HG002compoundhethomalt
79.0191
99.6564
65.4628
87.5701
2901290153152
99.3464
ckim-vqsrINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9751
40400
ckim-vqsrINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9857
20200
ckim-vqsrINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6933
10100
ckim-vqsrINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9405
10100
ckim-vqsrINDELD1_5func_cds*
99.6885
100.0000
99.3789
53.3333
159016010
0.0000
ckim-vqsrINDELD1_5func_cdshet
99.4220
100.0000
98.8506
62.8205
8508610
0.0000
ckim-vqsrINDELD1_5func_cdshetalt
0.0000
100.0000
00000
ckim-vqsrINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.7273
7407400
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0829
93.1978
97.0458
62.0799
37132713712113105
92.9204
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.7729
96.8794
96.6667
75.3175
13664413344639
84.7826
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.3918
87.9802
99.5128
30.5121
1603219163488
100.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.6913
98.9362
92.6526
62.3535
74487445958
98.3051
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9141
1101100
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7897
80800
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.7742
10100
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3769
20200
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2755
98.9912
99.5615
74.4850
6378165063794281255
90.7473
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5967
99.5697
99.6236
75.3470
3309314333087125100
80.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1068
94.7612
99.5714
64.0076
880948788283838
100.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3646
97.7617
98.9750
61.5381
3070570330705318294
92.4528
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0685
99.1132
99.0238
69.1438
1363512213593134112
83.5821
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6665
93.9188
99.5798
30.8815
872656587683737
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0327
99.8086
98.2688
63.7648
8344168344147145
98.6395
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.9511
97.2441
98.6684
67.2767
74121741107
70.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.6239
98.8506
98.3982
70.2519
430543074
57.1429
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
89.6000
81.1594
100.0000
52.5424
56135600
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8372
98.8372
98.8372
63.5593
255325533
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9648
1001000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.8854
70700
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1538
10100
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3590
20200
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5135
99.4812
99.5457
78.2406
15348153475
71.4286
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7296
100.0000
99.4606
78.2343
922092253
60.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.1049
91.8919
98.5507
79.7654
6866811
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7250
99.6337
99.8165
78.0419
544254411
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8588
99.8119
99.9058
81.3717
10612106111
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
80.5621
657065700
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.8904
94.5946
97.2222
86.4151
3523511
100.0000
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
82.0525
369036900
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.3452
92.0365
96.7728
58.9950
221919222197470
94.5946
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.2746
95.6815
96.8750
75.2809
709326822219
86.3636
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.3378
87.8389
99.5712
29.6743
1134157116155
100.0000