PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
23601-23650 / 86044 show all
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7238
100.0000
99.4490
62.9592
361036121
50.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6954
99.5943
99.7967
58.4810
491249110
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8145
99.6296
100.0000
64.7757
269126700
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.6522
91.6667
100.0000
48.0000
1111300
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
47.2637
211021110
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.8371
94.5372
95.1389
64.3074
12467212336360
95.2381
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
91.4428
98.3425
85.4478
84.5800
35662293937
94.8718
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.7052
90.8178
98.9404
37.4482
6336474788
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
96.6165
99.2278
94.1392
60.2041
25722571615
93.7500
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7805
96.6355
96.9260
63.2253
310210830909893
94.8980
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9234
99.0868
91.0959
82.4814
86886656561
93.8462
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5196
93.9394
99.2455
33.2429
15199817101313
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4848
99.7211
97.2789
61.7387
71527152019
95.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0078
97.9824
98.0331
65.1766
18943918943836
94.7368
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.7712
99.6205
94.0803
83.0466
52524452826
92.8571
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8135
96.1864
99.4965
31.6116
9083698855
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3534
99.7835
98.9270
64.3185
461146155
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1645
97.0494
97.2799
70.1462
3947120393411098
89.0909
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.3121
98.9474
93.8136
84.0303
13161411077364
87.6712
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4603
93.8144
99.2597
35.4174
154710217431313
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7250
99.6324
97.8339
67.7720
1084410842421
87.5000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2658
97.2995
97.2323
75.7006
48641354848138105
76.0870
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.5189
98.9555
94.1994
86.2906
18001915599669
71.8750
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6910
99.5997
97.7987
75.1563
1244512442822
78.5714
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
97.9637
97.9911
97.9364
69.6975
17563617563731
83.7838
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
97.3574
99.5074
95.2984
84.1819
60635272622
84.6154
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.7528
96.0459
99.5215
32.8514
7533183244
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
98.8792
99.4987
98.2673
65.6463
397239775
71.4286
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.6522
92.5170
92.7878
58.2513
680556695250
96.1538
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
79.1209
100.0000
65.4545
84.4193
1690723837
97.3684
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
93.3540
87.6993
99.7881
34.6260
3855447111
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
94.7368
99.2126
90.6475
53.5117
12611261312
92.3077
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
98.3051
100.0000
96.6667
85.6688
8708730
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
97.9592
100.0000
96.0000
88.3178
5204820
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
55.5556
1201600
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8723
100.0000
95.8333
85.3659
2302310
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
97.0149
95.5882
98.4848
97.0014
6536510
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
95.3488
93.1818
97.6190
96.9979
4134110
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
93.1818
90900
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.7612
1501500
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.9022
98.6444
99.1614
72.9208
9461394686
75.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.2375
99.0025
99.4737
82.2678
397437821
50.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.1793
97.2561
99.1202
37.6600
319933833
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
99.3521
100.0000
98.7124
72.0288
230023032
66.6667
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
96.8147
96.5909
97.0395
67.8647
595215901816
88.8889