PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
23351-23400 / 86044 show all
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
91.6667
84.6154
100.0000
90.7563
2242200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
100.0000
100.0000
30000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
90.4762
82.6087
100.0000
72.5000
1942200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
98.6301
97.2973
100.0000
80.2139
3613700
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
96.7742
93.7500
100.0000
85.0000
1511500
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
65.8537
1301400
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
82.6087
80800
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
75.0000
31300
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
50.0000
100.0000
11000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
40.0000
20300
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSmap_l100_m0_e0*
95.6522
100.0000
91.6667
97.0732
1101110
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m0_e0het
94.1176
100.0000
88.8889
96.0177
80810
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
92.3077
10100
ckim-vqsrINDELI16_PLUSmap_l100_m0_e0homalt
100.0000
100.0000
100.0000
98.8304
20200
ckim-vqsrINDELI16_PLUSmap_l100_m1_e0*
94.1176
92.3077
96.0000
96.2179
2422410
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m1_e0het
94.4444
94.4444
94.4444
95.2756
1711710
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
94.2857
21200
ckim-vqsrINDELI16_PLUSmap_l100_m1_e0homalt
100.0000
100.0000
100.0000
97.9592
50500
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0*
90.5660
92.3077
88.8889
96.4333
2422430
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0het
91.8919
94.4444
89.4737
95.6522
1711720
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
94.8718
21200
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0homalt
90.9091
100.0000
83.3333
97.8648
50510
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e1*
90.5660
92.3077
88.8889
96.4520
2422430
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e1het
91.8919
94.4444
89.4737
95.6720
1711720
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
95.0000
21200
ckim-vqsrINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
100.0000
0.0000
0.0000
10000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
100.0000
0.0000
0.0000
10000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000