PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
23301-23350 / 86044 show all
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.0588
94.2857
100.0000
75.5245
3323500
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
85.1695
3503500
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4350
98.8764
100.0000
76.2803
8818800
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
76.0181
5305300
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
65.4545
1911900
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.1579
1601600
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.1538
92.5926
100.0000
92.1875
2522000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.7431
84.7458
100.0000
72.2222
5095500
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.4009
91.5493
97.4359
75.4588
455424561212
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.4079
91.7293
97.2477
87.7940
1221110633
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
86.7925
100.0000
76.6667
88.7218
2302377
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.6645
92.0290
97.4555
73.3740
381333831010
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
93.9997
91.5094
96.6292
86.9883
9798633
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.7959
100.0000
81.4815
87.3832
2202255
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.0614
92.4309
97.8462
82.1967
635526361412
85.7143
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.3320
93.0894
97.6852
88.7676
2291721153
60.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.5736
100.0000
89.7059
91.4033
6106177
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.5454
94.9673
98.1769
85.0222
14537714542718
66.6667
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.6974
95.4955
97.9299
88.5024
63630615135
38.4615
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.6667
99.0244
94.4186
91.1777
20322031211
91.6667
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
94.4355
91.8750
97.1429
81.8436
441394421312
92.3077
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
94.0845
91.8750
96.4029
90.0144
1471313454
80.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
91.9540
97.5610
86.9565
88.1748
4014066
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
93.1034
22200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
50.0000
100.0000
11000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
66.6667
50.0000
100.0000
75.0000
11200
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
93.3805
89.3617
97.7778
82.0000
4254411
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
92.8571
86.6667
100.0000
89.5161
1321300
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
94.3396
89.2857
100.0000
58.4615
2532700
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
88.8889
100.0000
80.0000
91.8033
40411
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
97.9112
96.6495
99.2063
75.8157
3751337532
66.6667
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
98.1963
97.6190
98.7805
79.4486
164416221
50.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3607
94.8571
100.0000
65.1452
166916800
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
98.9011
100.0000
97.8261
83.7456
4504511
100.0000