PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22951-23000 / 86044 show all
ckim-vqsrINDELI1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-vqsrINDELI1_5map_l250_m0_e0homalt
94.7368
100.0000
90.0000
96.9880
90911
100.0000
ckim-vqsrINDELI1_5map_l250_m1_e0*
94.8837
96.2264
93.5780
97.2825
102410271
14.2857
ckim-vqsrINDELI1_5map_l250_m1_e0het
91.8033
93.3333
90.3226
98.0000
5645660
0.0000
ckim-vqsrINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.8947
20200
ckim-vqsrINDELI1_5map_l250_m1_e0homalt
98.8764
100.0000
97.7778
94.4853
4404411
100.0000
ckim-vqsrINDELI1_5map_l250_m2_e0*
94.7368
95.5752
93.9130
97.5385
108510871
14.2857
ckim-vqsrINDELI1_5map_l250_m2_e0het
91.7293
92.4242
91.0448
98.1295
6156160
0.0000
ckim-vqsrINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.3051
20200
ckim-vqsrINDELI1_5map_l250_m2_e0homalt
98.9011
100.0000
97.8261
95.2675
4504511
100.0000
ckim-vqsrINDELI1_5map_l250_m2_e1*
94.7826
95.6140
93.9655
97.5904
109510971
14.2857
ckim-vqsrINDELI1_5map_l250_m2_e1het
91.7293
92.4242
91.0448
98.1892
6156160
0.0000
ckim-vqsrINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.3333
20200
ckim-vqsrINDELI1_5map_l250_m2_e1homalt
98.9247
100.0000
97.8723
95.2716
4604611
100.0000
ckim-vqsrINDELI1_5map_siren*
98.0317
96.9052
99.1848
83.6671
2912932920248
33.3333
ckim-vqsrINDELI1_5map_sirenhet
97.0962
95.4194
98.8329
85.9291
1604771609195
26.3158
ckim-vqsrINDELI1_5map_sirenhetalt
95.3271
91.0714
100.0000
86.8047
1021010200
ckim-vqsrINDELI1_5map_sirenhomalt
99.5465
99.5050
99.5881
78.6343
12066120953
60.0000
ckim-vqsrINDELI1_5segdup*
99.0079
98.8669
99.1493
95.7156
104712104992
22.2222
ckim-vqsrINDELI1_5segduphet
98.7001
98.6989
98.7013
96.8242
531753270
0.0000
ckim-vqsrINDELI1_5segduphetalt
96.7742
93.7500
100.0000
95.8106
4534600
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
ckim-vqsrINDELI1_5segdupwithalt*
0.0000
100.0000
00000
ckim-vqsrINDELI1_5segdupwithalthet
0.0000
100.0000
00000
ckim-vqsrINDELI1_5segdupwithalthetalt
0.0000
100.0000
00000
ckim-vqsrINDELI1_5segdupwithalthomalt
0.0000
100.0000
00000
ckim-vqsrINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
54.1667
2202200
ckim-vqsrINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
ckim-vqsrINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-vqsrINDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
58.0645
1301300
ckim-vqsrINDELI6_15**
97.6524
96.7691
98.5520
52.9508
2402180224026353331
93.7677
ckim-vqsrINDELI6_15*het
99.0039
98.6943
99.3155
60.3259
990213198666849
72.0588
ckim-vqsrINDELI6_15*hetalt
95.9384
92.2582
99.9244
35.7201
7889662793065
83.3333
ckim-vqsrINDELI6_15*homalt
97.7408
99.8557
95.7136
54.8957
623096230279277
99.2832
ckim-vqsrINDELI6_15HG002complexvar*
98.1251
97.1828
99.0859
57.0293
465713546614342
97.6744
ckim-vqsrINDELI6_15HG002complexvarhet
99.2942
98.8110
99.7821
59.6661
232728229054
80.0000
ckim-vqsrINDELI6_15HG002complexvarhetalt
95.4701
91.3328
100.0000
52.5604
1117106115800
ckim-vqsrINDELI6_15HG002complexvarhomalt
98.4178
99.9176
96.9624
55.5753
1213112133838
100.0000
ckim-vqsrINDELI6_15HG002compoundhet*
94.2580
92.3997
96.1926
36.2881
81096678110321319
99.3769
ckim-vqsrINDELI6_15HG002compoundhethet
86.6987
97.5962
77.9904
84.7889
20351634645
97.8261
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
ckim-vqsrINDELI6_15HG002compoundhethomalt
18.5075
100.0000
10.1974
63.1068
31031273272
99.6337
ckim-vqsrINDELI6_15decoy*
0.0000
100.0000
00000
ckim-vqsrINDELI6_15decoyhet
0.0000
100.0000
00000
ckim-vqsrINDELI6_15decoyhetalt
0.0000
100.0000
00000
ckim-vqsrINDELI6_15decoyhomalt
0.0000
100.0000
00000
ckim-vqsrINDELI6_15func_cds*
97.6744
97.6744
97.6744
41.0959
4214211
100.0000
ckim-vqsrINDELI6_15func_cdshet
100.0000
100.0000
100.0000
44.1860
2402400
ckim-vqsrINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
0.0000
31300
ckim-vqsrINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000