PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22501-22550 / 86044 show all
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.8671
76.7932
89.9844
83.5648
1092330115012868
53.1250
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
81.8034
73.8226
91.7189
86.0200
674239731668
12.1212
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
89.8495
82.0513
99.2857
77.1491
4169141732
66.6667
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.6814
77.2332
91.3043
82.9887
97728810299859
60.2041
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
82.7292
74.3073
93.3042
85.8380
590204641468
17.3913
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.9538
82.0896
99.4845
75.5359
3858438622
100.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0742
88.4708
95.9835
76.8106
3668478372815682
52.5641
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.8799
87.4858
96.7387
79.1713
23143312373809
11.2500
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
78.5714
30300
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.6743
90.1869
99.6315
70.8673
1351147135253
60.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0520
90.0033
98.4822
69.9861
8220913830512813
10.1562
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2859
91.1304
99.8384
63.0944
4942481494485
62.5000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50*
92.3491
87.7265
97.4860
57.2867
4260596434311272
64.2857
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50het
92.2085
86.7552
98.3934
61.1512
26794092756458
17.7778
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
94.3567
89.4171
99.8741
46.5320
1580187158621
50.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200*
66.6667
57.6923
78.9474
94.6176
15111540
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200het
64.5161
58.8235
71.4286
94.8529
1071040
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
71.4286
55.5556
100.0000
92.8571
54500
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
97.9052
96.1507
99.7250
58.1999
10491420105182927
93.1034
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
98.1064
96.3243
99.9558
58.4821
6761258678631
33.3333
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
64.2857
50500
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8461
95.8323
99.9464
57.4072
3725162372722
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.4572
94.0150
99.0295
31.3640
700644670416948
69.5652
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
96.6143
93.9646
99.4178
33.0736
44062834440265
19.2308
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
28.5714
50500
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
96.9007
94.0899
99.8846
27.3413
2595163259633
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
66.1640
61.9048
71.0526
87.6623
261627115
45.4545
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
64.8148
55.5556
77.7778
89.0688
20162160
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
88.0000
60600
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50*
95.7008
92.5507
99.0729
30.3936
319325732063024
80.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50het
96.3741
93.2180
99.7514
32.0838
1993145200650
0.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ckim-isaacSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
95.5795
91.5332
100.0000
25.9259
1200111120000