PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22451-22500 / 86044 show all
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
ckim-isaacSNPtvHG002compoundhethet
84.5719
74.3206
98.1038
53.1755
3473120037257217
23.6111
ckim-isaacSNPtvHG002compoundhethetalt
96.5807
93.3875
100.0000
18.9325
8055780500
ckim-isaacSNPtvHG002compoundhethomalt
88.3010
79.3093
99.5923
36.8889
268770126871111
100.0000
ckim-isaacSNPtvdecoy*
0.0000
100.0000
00000
ckim-isaacSNPtvdecoyhet
0.0000
100.0000
00000
ckim-isaacSNPtvdecoyhetalt
0.0000
100.0000
00000
ckim-isaacSNPtvdecoyhomalt
0.0000
100.0000
00000
ckim-isaacSNPtvfunc_cds*
99.2280
98.5129
99.9536
23.4678
430665430620
0.0000
ckim-isaacSNPtvfunc_cdshet
99.3184
98.7204
99.9238
24.8927
262334262320
0.0000
ckim-isaacSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
28.5714
1001000
ckim-isaacSNPtvfunc_cdshomalt
99.0820
98.1808
100.0000
21.0849
167331167300
ckim-isaacSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2766
92.2164
96.4310
62.9827
139811814055220
38.4615
ckim-isaacSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.9529
91.4315
96.6173
65.9835
90785914321
3.1250
ckim-isaacSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.5585
93.7023
99.5943
53.9683
4913349121
50.0000
ckim-isaacSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1945
93.5761
98.9636
58.8872
25900177826068273187
68.4982
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.3802
93.5166
99.4246
60.9201
164291139165889615
15.6250
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
57.1429
1211200
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.6931
93.6813
99.9050
54.1997
9459638946897
77.7778
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.0520
90.0033
98.4822
69.9861
8220913830512813
10.1562
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.8889
80.0000
100.0000
79.6610
1231200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2859
91.1304
99.8384
63.0944
4942481494485
62.5000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.8288
94.8353
98.9080
47.7162
1267691268147
50.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.9558
94.9708
99.0256
50.8383
8124381381
12.5000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.2222
94.5946
100.0000
40.2102
4552645500
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.4383
94.0202
98.9840
57.6608
204413020462114
66.6667
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.7794
94.2322
99.4681
58.4858
130780130971
14.2857
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.6513
93.6387
99.8643
55.3874
7365073610
0.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.5815
94.1667
99.1234
62.7989
1356841357127
58.3333
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.8542
94.3107
99.5386
63.3094
8625286340
0.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
96.7615
93.9048
99.7976
61.1635
4933249310
0.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
76.2347
73.3333
79.3750
87.3317
121441273310
30.3030
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.1358
70.1613
80.8696
87.6477
873793220
0.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.3117
82.9268
94.4444
87.1429
3473421
50.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000